Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02954 ATGGGCGCATCCAACAAATGGTGGAGAATAGTTCGTAGCAAGTTCCTAAGATCATCCAACAGTAAATTAGGCATAACAATCCCCCCTCGTACGAGTGTTTGCACAAATCAAAGCGAAGAAGCCATACTCAATCAGAATGAAGCAACCACAACCACAACCTCCACGACGGAAGACTTCAATTTGGCAATACCAAATTCTTCGACGAGGATATTATCCAAGGAAGACATTGCGGCAATTAAGATCCAAGCTTATTTCAGGGGTCACCTTGCAAGACGAGCATATAGGGCTCTGAAGAGCCTAGTGAAGTTGCAAGCATTGGTTCGTGGGGTGTGTGTAAGGAGACAATCACGTATAGCGATGCAGTGTATGCACGCGCTTGTTCGCTTACAAGTCAGGATTCGTGCAAGACAATTACTTGGTTCTACTAGTTTTGATAATTAA 441 0.4399 MGASNKWWRIVRSKFLRSSNSKLGITIPPRTSVCTNQSEEAILNQNEATTTTTSTTEDFNLAIPNSSTRILSKEDIAAIKIQAYFRGHLARRAYRALKSLVKLQALVRGVCVRRQSRIAMQCMHALVRLQVRIRARQLLGSTSFDN. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02954 146 PANTHER IQ-DOMAIN 5-RELATED 14 137 - -
Seca11g02954 146 Pfam IQ calmodulin-binding motif 77 95 IPR000048 GO:0005515
Seca11g02954 146 Gene3D - 72 125 - -
Seca11g02954 146 ProSiteProfiles IQ motif profile. 98 125 IPR000048 GO:0005515
Seca11g02954 146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 118 IPR027417 -
Seca11g02954 146 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
Seca11g02954 146 SMART iq_5 73 95 IPR000048 GO:0005515
Seca11g02954 146 SMART iq_5 96 117 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02954 Seca-Chr11 57264879 57265856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02954 61 139 IQD Protein Family AT3G51380 70.886 2.78e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02954 - - cam:101507643 195.667