Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02951 ATGAATTTTAATTCATCTACTTCCCATCTACCAGAATCACTTTTACCAAGCGAAGCATCACCCGAATGGAACAACAAAGCAGATAATGCATGGCAACTCACAGCAGCAACACTAGTGGGCCTTCAAAGTGTTCCTGGGCTTGTGATACTCTACGGTAGCATGGTTAAGAGGAAATGGGCCGTGAATTCTGCCTTTATGGCGCTATATGCTTTCGCTGCTGTCCTCATTTGTTGGGTTTTATGGGCCCATCGCATGGCATTTGGCACTAAGCTTATGCCATTTGTTGGAAAGCCCAACAATGCTCTGACGGAGAAGTTTCTCCTTGCCCAGTCATCAACACATGATTATTTTCCAATGGCTGACTTTGTGTTCTATCAATTTGCTTTTGCTGCAATTACTGTTGTGTTGCTTGCAGGGTCTTTGCTTGGGAGAATGAATTTCTATGCATGGATGATGTTTGTTCCTATGTGGCTTACACTGTCTTACACCATTGGTGCTTTCAGCATATGGGGCAATGGCTTCCTTGAACAAAAAATAATTGATTATGCTGGTGGCTTTGTCATTCATCTATCTTCAGGTGTCGCAGGTTTCACAGCCGCTTATTGGGTTGGTCCAAGAATTACAGAAGACAGACAAAACTTTCCACCAAATAACATAACTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAATGGTGGAGCTCCATTCCAAGTGGGAGAAATCGCGTCCTTGGCCATCTTCAACACCCATCTATGCACTGCCACAAGCCTACTTGTTTGGCTTTCCCTGGATATGATTGTATATAGGAAGAGCTCAGTGATAGGTGCTGTCCAAGGAATGATGACTGGCCTTGTTTGCATCACCCCAGGTGCAGGCTTGGTTGATTCATGGGCAACAATATTGATGGGAGCTTTATCCGGTTCAATTCCATGGTACACCATGATGGTGTTGCACAAGAGATCAGTGTTCTTTCAGAGTGTGGATGATACATTAGGAGTCTTTCACACTCATGCTGTGGCTGGTATTCTTGGGGGACTCCTTTCTGGTGTGTTTGCCAAACCCAACCTTTTAAAGATGATCTATGGTCATGGAATGACATATGGTCCTGGCTTATTCTATAGCTATTTTGAGGGGAATTTGGGACAAGGTTTAAAGCAACTATGCTACCAGTTATTAGGAGCAACTTTTATTACTCTTTGGAATGTCATTGTTACTAGCCTCATCTGTATTCTTATAAGGCGCATTGTGGATCTTAGGATGCAAGAAGAGGACCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCTTATGCATTGTGGGGTGATGGGGAAAGAATGCGAGTCGCTCTTCGTCTTCATATAAGTCCAACAATTCCTTCCATTTGTCGGCAGAGGTTTTTGATTCCTGTCAATAGGAAAGAAATGGAATAA 1452 0.4366 MNFNSSTSHLPESLLPSEASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFAAVLICWVLWAHRMAFGTKLMPFVGKPNNALTEKFLLAQSSTHDYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMMFVPMWLTLSYTIGAFSIWGNGFLEQKIIDYAGGFVIHLSSGVAGFTAAYWVGPRITEDRQNFPPNNITHMLGGAGFLWMGWTGFNGGAPFQVGEIASLAIFNTHLCTATSLLVWLSLDMIVYRKSSVIGAVQGMMTGLVCITPGAGLVDSWATILMGALSGSIPWYTMMVLHKRSVFFQSVDDTLGVFHTHAVAGILGGLLSGVFAKPNLLKMIYGHGMTYGPGLFYSYFEGNLGQGLKQLCYQLLGATFITLWNVIVTSLICILIRRIVDLRMQEEDLEVGDDAAHGEEAYALWGDGERMRVALRLHISPTIPSICRQRFLIPVNRKEME. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02951 483 NCBIfam ammonium transporter 28 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca11g02951 483 SUPERFAMILY Ammonium transporter 23 425 - -
Seca11g02951 483 PANTHER AMMONIUM TRANSPORTER MEP2 13 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca11g02951 483 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g02951 483 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca11g02951 483 Gene3D Ammonium transporter AmtB like domains 6 447 IPR029020 -
Seca11g02951 483 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005886
Seca11g02951 483 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005886
Seca11g02951 483 PRINTS Rhesus blood group protein signature 126 142 IPR002229 GO:0005886
Seca11g02951 483 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005886
Seca11g02951 483 Pfam Ammonium Transporter Family 30 444 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca11g02951 483 FunFam Ammonium transporter 13 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02951 Seca-Chr11 57211346 57219772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02951 119 452 Inorganic Solute Cotransporters AT2G38290 60.299 4.00e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02951 K03320 - gmx:100815876 831.632