Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02947 ATGGAGTTTGTGCCAAATCAATCCCCTTTGTTTGGTAATTCCTTTGGGAATTTCGTTGAGAGGATCAAACGGGTTGGTAGCCTCGCCGTCTCTGCCATCATTGGGAACATCTTCTCTGCGATCTTAACCTTCTGTTTTGCATTCGTGGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTAGGTGTCTCTTATACTTGATTGATGTTCTTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGGTAATTATGGGAGCTACTGAAATAAGCTTTGATGAAGTTCAGAACATCTTTGACATTGGAGGTGCCAAAGGTTTGTCAAGTGCTTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAAAAATGTTGATGCATCTGGTGAAAGAGTTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGTTCTTGCCCATTATGCAGACGGGATCTGTAA 705 0.4411 MEFVPNQSPLFGNSFGNFVERIKRVGSLAVSAIIGNIFSAILTFCFAFVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIRCLLYLIDVLASLLSGRLVRERIGPAMLSAVQSQVIMGATEISFDEVQNIFDIGGAKGLSSASVEKIPKITITSDKNVDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02947 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 233 IPR044523 -
Seca11g02947 234 SUPERFAMILY RING/U-box 173 234 - -
Seca11g02947 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Seca11g02947 234 Pfam Ring finger domain 188 231 IPR001841 -
Seca11g02947 234 CDD RING-H2_NIPL1-like 188 231 - -
Seca11g02947 234 FunFam NEP1-interacting protein-like 1 149 234 - -
Seca11g02947 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Seca11g02947 234 SMART ring_2 189 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02947 Seca-Chr11 57139647 57142144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02947 19 234 C3H Transcription Factor Family AT5G66070 75.000 5.91e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02947 - - gmx:100816939 406.757