LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02937	ATGATCTTTGCCCTTGTGTACTGCACTGCTGGAATTTCAGGTACCTTACTTATCCTCACTACTCATATGCTTTGCCTTTTAATTTGCTTCACATTTCATGGTGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTCTCCCTCACAAGAGCTCTATTCTACATTATCATGCAATGTCTTGGAGCAATCTGTGGTGCTGGTGTGGTGAAGGGCTTTGAGGGTAATGCTAGATATGAGTTGTTCAAAGGTGGAGCAAATTTTGTAAATCCTGGATACACCAAGGGTGATGGCCTTGGAGTTGAGATTGTTGGCACCTTTGTTCTTGTCTACACCATTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGGGACTCTCATGTTCCTATTTTGGCTCCCCTTCCTATTGGGTTTGTTGTGTTCTTGGTCCACCTAGCCACCATTCCCATCACAGGAACTGACATTAACCCATCACAGGAACTGGCATTAACCTAA	507	0.4477	MIFALVYCTAGISGTLLILTTHMLCLLICFTFHGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYELFKGGANFVNPGYTKGDGLGVEIVGTFVLVYTIFSATDAKRNARDSHVPILAPLPIGFVVFLVHLATIPITGTDINPSQELALT.	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02937	168	ProSitePatterns	MIP family signature.	36	44	IPR022357	-
	Seca11g02937	168	SUPERFAMILY	Aquaporin-like	14	166	IPR023271	-
	Seca11g02937	168	Gene3D	Glycerol uptake facilitator protein.	1	168	IPR023271	-
	Seca11g02937	168	Pfam	Major intrinsic protein	32	166	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca11g02937	168	PRINTS	Major intrinsic protein family signature	141	163	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca11g02937	168	PRINTS	Major intrinsic protein family signature	55	74	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca11g02937	168	PRINTS	Major intrinsic protein family signature	105	123	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca11g02937	168	PRINTS	Major intrinsic protein family signature	18	42	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca11g02937	168	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	1	165	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02937	Seca-Chr11	56962780	56963457	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02937	1	165	Major Intrinsic Protein MIP	AT1G01620	73.939	6.09e-79	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02937	K09872		-	gmx:100793242	266.544