Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02919 ATGTCACCTCCGTCATTTACATCAGAAAGTGATGCCAATGACGTAAGGCATCAATTCCCAATGAACAGTGAAGCATTTGACCCACATTCATTCAAGAGGGCCAGGACTTCTGACAGCAGCCACTTCAATGCCCCTTCAAGGATGATTCAGCCTCCACCAAACCCCCAATTCAACAAAGGAACGAATAATATTTTCTTCAAGACTCACATTTGTGCCAAGTTCACAATTGGAGCATGTAGGAACGGCGAGAACTGCAATTTTGCACATGTAGTTGAAAACATGAGGCAGCCACCACCAGATTGGCAGAAGCTTGTTGGCTTATGTAATGAAGAACGGTCTTTATGGGGAAATTGGGACGAGGACCAGAAAATCATTCATAAGATGCAACTGTGCAAGAAGTATTACAATGGAGAGGAATTCTCTTATGGTGAAAAGTTCAGGGATGATTCGAGGAGGTTTAGGGAGAGCTCATCTATAAGCATAAGACCTAATGGATACCCAAAGTCCTATGGTGACGACTCTAATAATTCACAAGGTAATAGAGCTGTGAACAGAAATGGAAAGTCCACTTATTGGAAGACTAAGCTATGTATCCAGTGGGAGACAATAGGTCATTGTTCCTTTGGGGAGGATTGTCACTTTGCGCATGGACTAGGAGGTAATAGAAACTCATCGTATTGGTTGTCTTGCAAATCAGAGTTACAATTTCCTGGAGGACGTATTGAAGCTGAAACTGTAGGTGCCATTTCAAATTCAACTAAAGTTATCATTCCAACTATACCAAAAGCCTTATCAATTTCTTCCAATGATGCTCCTACTAACTACACAGCAAGTCTACCTCTGCCAAATGAAGAGGTGCAGGGTAAGAAGAATTTACTCAAGTGGAATGGAACAAAGAAGATAAATCAAATTTATGGTGATTGGATTGATGATTTACCGTTGGTTCCCAACTTGCCAAGTAGAGCTGAGACTTGA 975 0.4144 MSPPSFTSESDANDVRHQFPMNSEAFDPHSFKRARTSDSSHFNAPSRMIQPPPNPQFNKGTNNIFFKTHICAKFTIGACRNGENCNFAHVVENMRQPPPDWQKLVGLCNEERSLWGNWDEDQKIIHKMQLCKKYYNGEEFSYGEKFRDDSRRFRESSSISIRPNGYPKSYGDDSNNSQGNRAVNRNGKSTYWKTKLCIQWETIGHCSFGEDCHFAHGLGGNRNSSYWLSCKSELQFPGGRIEAETVGAISNSTKVIIPTIPKALSISSNDAPTNYTASLPLPNEEVQGKKNLLKWNGTKKINQIYGDWIDDLPLVPNLPSRAET. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02919 324 SUPERFAMILY CCCH zinc finger 190 219 IPR036855 GO:0046872
Seca11g02919 324 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Seca11g02919 324 MobiDBLite consensus disorder prediction 157 185 - -
Seca11g02919 324 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g02919 324 MobiDBLite consensus disorder prediction 1 59 - -
Seca11g02919 324 MobiDBLite consensus disorder prediction 155 185 - -
Seca11g02919 324 SMART c3hfinal6 65 91 IPR000571 GO:0046872
Seca11g02919 324 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Seca11g02919 324 ProSiteProfiles Zinc finger C3H1-type profile. 65 92 IPR000571 GO:0046872
Seca11g02919 324 PANTHER CCCH ZINC FINGER/TIS11-RELATED 36 145 IPR045877 GO:0003729
Seca11g02919 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 90 IPR000571 GO:0046872
Seca11g02919 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Seca11g02919 324 SUPERFAMILY CCCH zinc finger 63 95 IPR036855 GO:0046872
Seca11g02919 324 Gene3D - 185 223 - -
Seca11g02919 324 Gene3D - 58 96 - -
Seca11g02919 324 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02919 Seca-Chr11 56203697 56205654 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g02919 zf-CCCH 3.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02919 - - gmx:100793865 404.831