Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02918 ATGCCACCCCCTACTCAACCTCCAACAGAAACTGATCCGTCTACACAAGAGGTATGTGGCAAGAGGAAACCTAGTAGGCCTGCTTCTAGTTGTTGGACTCATTTTAAAAGGGAAGGGGATAAGGCTGTATGTAACTACTGTGGCAAAACCTATGCATGCAATAGTTCTAACCATGGGACAACAAACTTGAACAAACATTAG 201 0.4378 MPPPTQPPTETDPSTQEVCGKRKPSRPASSCWTHFKREGDKAVCNYCGKTYACNSSNHGTTNLNKH. 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02918 66 PANTHER OS03G0264950 PROTEIN-RELATED 10 66 - -
Seca11g02918 66 Pfam BED zinc finger 30 66 IPR003656 GO:0003677
Seca11g02918 66 ProSiteProfiles Zinc finger BED-type profile. 26 66 IPR003656 GO:0003677
Seca11g02918 66 SUPERFAMILY beta-beta-alpha zinc fingers 29 66 IPR036236 -
Seca11g02918 66 SMART bed5 26 66 - -
Seca11g02918 66 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02918 Seca-Chr11 56193904 56194104 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g02918 zf-BED 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02918 - - lja:Lj3g3v1309430.1 67.0106