Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02916 ATGGATGAAGATTTGCTGAAGCGCAACACTGATTGTGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGACTGAATGTGAGTATCGGCATAATGAGATTGCGAGACTTAACCCGAGGGATTGCTGGTACTGGTTATCCGGGAGTTGCATTAATCCAACTTGTGCTTTTAGACACCCTCCTTTGGATGGGAATACTGGAGTGCCTTCTGAACCTACACAATCTCCATTACCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCATTTTTGCATGGGCCTGATGATAGCTTTTTTAGTACTGTAAAGCCTGTGAAGAATGACAATGGAAGCATCAATGCTCTCAACCTAGAAAATAAAATTTCATCAGGAAATAAAACAGGTGTAGGATCAACACCTACTGAAAAGCATTTTGACCAATCTTTAACTGCCCCAAAAGCTTTGTCTGATCTTAAACATCAGCCTAAGGAAGATCGTCAGCTACCATTACCTGAAATTGTTAAACAGCAAGGTGATTGCCTGGAGTCATCTGCTTTTGACTATAAAGAAGCTACAGTGACTAGGTCTCTGTTTCCAGATGACGACTTTGTTCATAACATATCTCATTTATGCACTGAGCAGAGTTCAGAGGAACAAGTAAATAGTCACGTAGAGCCTGAGGAGCGTTGGGAATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGAGAACCTGGGTTATGAGGATGATTCTGAATATTTGCCAGTGCTAGATATGGATGACCAGGAACTGAAGGAGCAATACTCAGGGTATGAATTTGAAGATCCAGTTGAGTATGATACTATGTGCCTAGATGCTGATATTCTGTATGAGCAAGGAGTGTATGATGGTTACAAATGTTTTGATAGAGATTTAACTCATGCTAATGGCGGAAAATTTCAAGCTTATTCCAGAGAAATAATCTTAGATTCTATATTATCCCGGAAAAGGATTCGGATGTCAGCCGAGATGGCTGCTTGTGACAAAAACTTAGATCTACGTGACCGTCTGAGGAGACGTAGGGAGATTAATGATCCTTCAGTTTTCTTAAGAAGACATGAATCATCTTCTTTGACAGTTCGGAACCAAGAAAGGCATCAAAGGCATGGCCTTGGTCAGCGGCTAAGTAGAAGATTGACATCACAGTTGGGATTTAGCCCTATAGACTCGATCAGAGAGGTTGAAACTCTTTCAGTTGCTAACAAGCACAGGTTATTTAGGCATTCCCAGCAACATAGGCCCAGAAAGCATTATAGAGAAAAACTAGCAAATCGGCAGTTCCTTTCATCTAAAATGCCCAGGAAACCATTTTTAAAGCAAAGGAGATTTATTCAGGAATCCACTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAGGAAGAGAAGAAGAAGGCTGAAGAAAGTTTACATTGTCAAAGCACATCAGCTGATTTCCAGGATCCCAAACCTCTGAATGAAATTCTCAAGGACAAAAGGACCGTGGATCGAGTGAGAGATGACAATATCTGCAACAATTGA 1584 0.4072 MDEDLLKRNTDCVYFLASPLTCKKGTECEYRHNEIARLNPRDCWYWLSGSCINPTCAFRHPPLDGNTGVPSEPTQSPLPANKTMVPCYFFFNGFCNKGDKCSFLHGPDDSFFSTVKPVKNDNGSINALNLENKISSGNKTGVGSTPTEKHFDQSLTAPKALSDLKHQPKEDRQLPLPEIVKQQGDCLESSAFDYKEATVTRSLFPDDDFVHNISHLCTEQSSEEQVNSHVEPEERWESSPGFDVLVHDESENLGYEDDSEYLPVLDMDDQELKEQYSGYEFEDPVEYDTMCLDADILYEQGVYDGYKCFDRDLTHANGGKFQAYSREIILDSILSRKRIRMSAEMAACDKNLDLRDRLRRRREINDPSVFLRRHESSSLTVRNQERHQRHGLGQRLSRRLTSQLGFSPIDSIREVETLSVANKHRLFRHSQQHRPRKHYREKLANRQFLSSKMPRKPFLKQRRFIQESTTFSGPKTLAEIKEEKKKAEESLHCQSTSADFQDPKPLNEILKDKRTVDRVRDDNICNN. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02916 527 Gene3D - 74 187 - -
Seca11g02916 527 Gene3D - 3 63 - -
Seca11g02916 527 Coils Coil 477 497 - -
Seca11g02916 527 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Seca11g02916 527 MobiDBLite consensus disorder prediction 375 394 - -
Seca11g02916 527 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Seca11g02916 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Seca11g02916 527 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 519 - -
Seca11g02916 527 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Seca11g02916 527 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Seca11g02916 527 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Seca11g02916 527 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Seca11g02916 527 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Seca11g02916 527 Pfam Zinc-finger containing family 7 66 IPR041686 -
Seca11g02916 527 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02916 Seca-Chr11 56180618 56184212 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g02916 zf-CCCH_3 2.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02916 - - aprc:113847503 823.928