Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02892 ATGACAAGGTGTGGTTGTGCCGCCTTCTTACGTGTGCGATATGTGGCAGCTAGTAGCCGTTGGCATATTAAAGCTTTTTCAGATGATCATAACCATGATATGTTAGCGGAAAAGTACATAGGAATGTTGCCGGCACATAGGAAGATGCATGAATGTGATGTGATTCAGATGAATACAATGCGAGATGCTGGTATCGCAGTTAGTGATGTTAAATCTGCATTTAAATACCTTAGAGAATTGGGAAGAAGTGACCGTGACATGTTTTGGAGACATACCGTTGATGCACAAGGTAGGCTTCAACATTTGTTTTGGTCGGATGGTAGATGTCAACAAGATTACCAGCTTTTCGGTGATGTAGTTGCCTTTGATGCAACATATCGTCGAAACAAGTACATGTCCCCTTTGGTTGTTTTTGCTGGAGTTAATCATCATAATCAAACGATTGTGTTTGGTAGTGGGCTAATTGCGAATGAAACGGAAGAGACCTATGTTTGGTTACCTAAACAGTTTGTTGATGCCATGAAGGGTAAGATTCCTACATCTGTGATTACTGATGGTGACCTTACAATGAAGAATGCAATCAAGGCTATTTTTCCCACTGCCCATCATAGACTATGTGCATGGCATTTGTTAAGGAATGCCACAAGCAACGTAACTAATCCAAGGTTCACAACCCACATTCGAGATAATGTTTTTGCTGGATTCCGGACTACATCACGGTGTGAGGGTATGCATTCTCAAGTTGGTCGATATGTCCATTATCGCAACAATTTGACAGAGTTTCTGAAGCACTTCTCGCGATATTTGGCATACACCAGGCAGCGTGAGTTGGAAGCGGATTTTGAGTCTATCATTGGTGAGCCGGTGTTGCAAACACCGTTTGAAGACATTGAGAGGTTTGCGGCCAAGATGTACACGAGGAGGGTTTTCTTGTTGTTTAGGCCGGTTTTGGAGAGGGAAGTTGATCTGAAGTGGTATGTTTCATTGGTACCACCGATAGTAGAAGTTAAGTGCTCTTGTTTGAGGATGGAGTCAATAGGAATACCCTGTGAACATATTATTGCTTTGTTACATTACTTGGATGTATCTGAACTGCCCGAGTCTCTTGTGTTAAATCGGTGGACTAAAAATGTGAAACAATGTGCTGAGGGAATTGGGGTTATAGGCATGAGTAATTCAGGGTCAAGGTGGAAGGATCAAGTAATGTCTTTGTTGTTTGAGTGTTATGAAGTATGCAAATTTGCAGGTAGAAGTGTGCCTAATCTGAATTTATCCAAACAAGTTATTAGGGAACTACTACAGAAGTTAAAACAAAGTGCGGAACCATGTAACCTTGAGGGAGCTCAAGAAAATGATGATGAGGTTATTGGCAATGTTAGGGATCCAGCACGAGTGAAAATTAAAGGGTGTGGAGCAAGACATATTTCTGTTGGGGGTAGAAGAACAACGTGTTGTAGCATATGTCAAGGTCCTGGACACAACAAGAAGACTTGCCCTCTTCGAAGATCGGAAGAAGTTGGTCGCACAACTACCACAAGAGAGGCTTCTTAA 1551 0.4197 MTRCGCAAFLRVRYVAASSRWHIKAFSDDHNHDMLAEKYIGMLPAHRKMHECDVIQMNTMRDAGIAVSDVKSAFKYLRELGRSDRDMFWRHTVDAQGRLQHLFWSDGRCQQDYQLFGDVVAFDATYRRNKYMSPLVVFAGVNHHNQTIVFGSGLIANETEETYVWLPKQFVDAMKGKIPTSVITDGDLTMKNAIKAIFPTAHHRLCAWHLLRNATSNVTNPRFTTHIRDNVFAGFRTTSRCEGMHSQVGRYVHYRNNLTEFLKHFSRYLAYTRQRELEADFESIIGEPVLQTPFEDIERFAAKMYTRRVFLLFRPVLEREVDLKWYVSLVPPIVEVKCSCLRMESIGIPCEHIIALLHYLDVSELPESLVLNRWTKNVKQCAEGIGVIGMSNSGSRWKDQVMSLLFECYEVCKFAGRSVPNLNLSKQVIRELLQKLKQSAEPCNLEGAQENDDEVIGNVRDPARVKIKGCGARHISVGGRRTTCCSICQGPGHNKKTCPLRRSEEVGRTTTTREAS. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02892 516 SMART 26again6 336 363 IPR006564 GO:0008270
Seca11g02892 516 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 437 IPR031052 GO:0006355
Seca11g02892 516 Pfam SWIM zinc finger 333 360 IPR007527 GO:0008270
Seca11g02892 516 ProSiteProfiles Zinc finger SWIM-type profile. 323 361 IPR007527 GO:0008270
Seca11g02892 516 Pfam MULE transposase domain 119 213 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02892 Seca-Chr11 55615703 55617575 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02892 MULE 1.5e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02892 - - tpra:123905832 457.218