Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02886 ATGGGTATCAATTGCAGACACGTTTTTGATAGATTACGGGGTTTTGCAACTTCTTGGAAGAAAAGAAGCACACCATCTGGCAGAAGAATTTTCCATAGGGATGTGGAAAAGGAAGAATTTCAATATGCCAGCACTCAATGTCTCTCATCCTATTATAGTGTCTTTGTGGTTCGATTGGCAATTATGGTCATGCTAGCCATCTTGATAGGTTTACTCACTTTCTTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTACAACGTCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACAGCTCAGGTTAAACTTTCTGAGTATGTGATCAGAAGTCACAGCAACCTTGCCACTCAAGCACAGCAAGTTGAGATGTATGAAGCAATGAGGGCTGTGACATGGGCACTGTTTGCTAGCAGAAAAGCTCTTAACTCAATAACTGTCCAGTATAGGAATGGATTTGTGCAGGCATTTCATAGAGACCTGAAGGATAATAATACGTTTTACATTTACTCTGATCTTGCTAATTACTCCATAGTTGCTAGTGGCTATAATGAGGTCAATTCATTTACAACAAATGAAGCATGGAATGATAAAGACAGTCATGGTAACAAGTCTGCAATTTGGTATCGTGAACCACTTGATCCTGTCAGTGGTGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAGGACTCAATCAATATAGCTGGTCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACAGATTCTCCATTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTTGCTGTTGTGGGGGTCACAACAGCACTTTATAGTGTGGGGCAGCTAATGAAAGAGCTAGTTGAGTTACACAGTGGACATATGTATTTGACCTCCCAAGAGGGTTATTTACTTGCAACTTCCACTAATGATCCTTTACTGACAAATTCAACAAAGCCACCTAAGCTTAAGATGGCTGTTGACAGTGAAAATGAAGTAATAAGACAGGGAGCTCAGTGGCTAAAGAAAACATATGGGAATAATTTCCCTCCAAGTCATGAGGTTCATGTAGAGAATGTCAGGCTAGGCCACCAACAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCTTTTAAAACGTTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAAATTGAGAGCAGAACTGATCAGTCACTTGGAAGCAAGGAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTACTTGACATTCTCATATCTGATGATCGTCTCACAAATGAACAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCACTGCTCCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTAGTCCTAGAAGATGCGGAATTTGACTTAGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAGATTATTTTAGACCTCTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCCGTGATAATGCAAATCTTCTTCTAGAGCAGAAGAAATCAGGCTGTTCACAAAAGAACAGAACGAAGCAACATGAAAATCAGGCAAAGAGGACTTCAAATAGTGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAACAGGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTAATGCGATTATACCTTCGTCTCAGTGCACCAGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCAAACAATGGCTTAGTGGTGAGTAGAATCACCTTGGCACTGAGTGACTGCAAAGATAATAAGCAGGCCTTGAAATAA 2361 0.4007 MGINCRHVFDRLRGFATSWKKRSTPSGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHSNLATQAQQVEMYEAMRAVTWALFASRKALNSITVQYRNGFVQAFHRDLKDNNTFYIYSDLANYSIVASGYNEVNSFTTNEAWNDKDSHGNKSAIWYREPLDPVSGEKIGKAMKIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNDPLLTNSTKPPKLKMAVDSENEVIRQGAQWLKKTYGNNFPPSHEVHVENVRLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCRDNANLLLEQKKSGCSQKNRTKQHENQAKRTSNSDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPVDATEQHCQVDFANNGLVVSRITLALSDCKDNKQALK. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02886 786 SMART HKATPase_4 596 748 IPR003594 -
Seca11g02886 786 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Seca11g02886 786 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Seca11g02886 786 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Seca11g02886 786 PRINTS Bacterial sensor protein C-terminal signature 732 745 IPR004358 GO:0016310|GO:0016772
Seca11g02886 786 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Seca11g02886 786 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Seca11g02886 786 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Seca11g02886 786 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 745 IPR036890 -
Seca11g02886 786 Gene3D - 471 550 - -
Seca11g02886 786 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Seca11g02886 786 FunFam Ethylene receptor 1 549 751 - -
Seca11g02886 786 FunFam Histidine kinase 1-like protein 471 550 - -
Seca11g02886 786 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 756 - -
Seca11g02886 786 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Seca11g02886 786 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Seca11g02886 786 Gene3D - 551 749 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02886 Seca-Chr11 55505098 55512118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02886 3 768 Histidine Kinase Gene Family AT2G17820 72.881 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02886 - - gmx:100801970 1399.42