LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02886	ATGGGTATCAATTGCAGACACGTTTTTGATAGATTACGGGGTTTTGCAACTTCTTGGAAGAAAAGAAGCACACCATCTGGCAGAAGAATTTTCCATAGGGATGTGGAAAAGGAAGAATTTCAATATGCCAGCACTCAATGTCTCTCATCCTATTATAGTGTCTTTGTGGTTCGATTGGCAATTATGGTCATGCTAGCCATCTTGATAGGTTTACTCACTTTCTTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTACAACGTCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACAGCTCAGGTTAAACTTTCTGAGTATGTGATCAGAAGTCACAGCAACCTTGCCACTCAAGCACAGCAAGTTGAGATGTATGAAGCAATGAGGGCTGTGACATGGGCACTGTTTGCTAGCAGAAAAGCTCTTAACTCAATAACTGTCCAGTATAGGAATGGATTTGTGCAGGCATTTCATAGAGACCTGAAGGATAATAATACGTTTTACATTTACTCTGATCTTGCTAATTACTCCATAGTTGCTAGTGGCTATAATGAGGTCAATTCATTTACAACAAATGAAGCATGGAATGATAAAGACAGTCATGGTAACAAGTCTGCAATTTGGTATCGTGAACCACTTGATCCTGTCAGTGGTGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAGGACTCAATCAATATAGCTGGTCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACAGATTCTCCATTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTTGCTGTTGTGGGGGTCACAACAGCACTTTATAGTGTGGGGCAGCTAATGAAAGAGCTAGTTGAGTTACACAGTGGACATATGTATTTGACCTCCCAAGAGGGTTATTTACTTGCAACTTCCACTAATGATCCTTTACTGACAAATTCAACAAAGCCACCTAAGCTTAAGATGGCTGTTGACAGTGAAAATGAAGTAATAAGACAGGGAGCTCAGTGGCTAAAGAAAACATATGGGAATAATTTCCCTCCAAGTCATGAGGTTCATGTAGAGAATGTCAGGCTAGGCCACCAACAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCTTTTAAAACGTTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAAATTGAGAGCAGAACTGATCAGTCACTTGGAAGCAAGGAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTACTTGACATTCTCATATCTGATGATCGTCTCACAAATGAACAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCACTGCTCCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTAGTCCTAGAAGATGCGGAATTTGACTTAGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAGATTATTTTAGACCTCTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCCGTGATAATGCAAATCTTCTTCTAGAGCAGAAGAAATCAGGCTGTTCACAAAAGAACAGAACGAAGCAACATGAAAATCAGGCAAAGAGGACTTCAAATAGTGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAACAGGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTAATGCGATTATACCTTCGTCTCAGTGCACCAGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCAAACAATGGCTTAGTGGTGAGTAGAATCACCTTGGCACTGAGTGACTGCAAAGATAATAAGCAGGCCTTGAAATAA	2361	0.4007	MGINCRHVFDRLRGFATSWKKRSTPSGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHSNLATQAQQVEMYEAMRAVTWALFASRKALNSITVQYRNGFVQAFHRDLKDNNTFYIYSDLANYSIVASGYNEVNSFTTNEAWNDKDSHGNKSAIWYREPLDPVSGEKIGKAMKIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNDPLLTNSTKPPKLKMAVDSENEVIRQGAQWLKKTYGNNFPPSHEVHVENVRLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCRDNANLLLEQKKSGCSQKNRTKQHENQAKRTSNSDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPVDATEQHCQVDFANNGLVVSRITLALSDCKDNKQALK.	787

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02886	786	SMART	HKATPase_4	596	748	IPR003594	-
	Seca11g02886	786	PRINTS	Bacterial sensor protein C-terminal signature	691	701	IPR004358	GO:0016310\|GO:0016772
	Seca11g02886	786	PRINTS	Bacterial sensor protein C-terminal signature	673	687	IPR004358	GO:0016310\|GO:0016772
	Seca11g02886	786	PRINTS	Bacterial sensor protein C-terminal signature	708	726	IPR004358	GO:0016310\|GO:0016772
	Seca11g02886	786	PRINTS	Bacterial sensor protein C-terminal signature	732	745	IPR004358	GO:0016310\|GO:0016772
	Seca11g02886	786	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	470	550	IPR036097	GO:0000155\|GO:0007165
	Seca11g02886	786	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	596	746	IPR003594	-
	Seca11g02886	786	ProSiteProfiles	Histidine kinase domain profile.	490	748	IPR005467	-
	Seca11g02886	786	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	538	745	IPR036890	-
	Seca11g02886	786	Gene3D	-	471	550	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02886	Seca-Chr11	55505098	55512118	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02886	3	768	Histidine Kinase Gene Family	AT2G17820	72.881	0.0	1158

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02886	-		-	gmx:100801970	1399.42

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