Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g02880 | ATGAACCTGTTCGTTGCTCTTCTCCGCACTTGCATCATTATTGGTCATTTGTTGGAGGAGAATCGATGGATTAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTTTTCATATTGCTTACAACTGGAGGAAAAAGCTCTCATATATTGCTTTTCAGCGAAGATCTTTTCTTTATTTACCTTCTTCCTCCCATCATTTTCAATGCAAGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATCATGCTCTTTTTTGAAATTGGTACATTGATATCATTTTGTATCATATCACTAGGTAATTTAACTAACTTCAACTCTTCACTTTCTATTTCTAGCTAA | 360 | 0.3556 | MNLFVALLRTCIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNARFQVKKKQFFRNFMTIMLFFEIGTLISFCIISLGNLTNFNSSLSISS. | 120 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g02880 | 119 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 2 | 105 | IPR018422 | GO:0006812|GO:0015385|GO:0016020|GO:1902600 | |
| Seca11g02880 | 119 | PRINTS | Na+/H+ exchanger signature | 88 | 96 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Seca11g02880 | 119 | PRINTS | Na+/H+ exchanger signature | 73 | 87 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Seca11g02880 | 119 | PRINTS | Na+/H+ exchanger signature | 59 | 70 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g02880 | Seca-Chr11 | 55219880 | 55220438 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca11g02880 | 1 | 106 | Antiporters | AT3G06370 | 82.075 | 2.80e-54 | 176 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g02880 | - | - | gmx:100791224 | 197.593 |