Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02862 ATGGCTGAGTCAGCATCCTCTTCTTCTTTCAACTATGGATTCACCTATGATGTATTCATCAGCTTCAGAGGCCTAGATACTCGTCATGGTTTTACTGGCAATCTTTACAAAGCTCTTCTTAATAGGGGAATCCACACTTTTATTGATGATGAGGAGCTTCAGAGAGGACAAGAAATCACACCATCACTTCTCAAGGCAATTGAAGAGTCCAGGATTGCCATTATTGTCCTCTCTCAGAACTATGCATCTTCTTCATTTTGTTTAGATGAACTTGTCAAGATCCTTGACTGTAATAAGGGAAAGGATGACCGGTTAGTTTGGCCAATTTTTTATTGTGTGGATCCTTCTGATGTGAGAAAGCAGACAGGGACTTATGGAGAAGCATTGTCTATACATAAAGAGAGGTTTGGTGACAACAATGAGAGGTTGCAGAAATGGAGGATGGCTTTACAGCAAGTAGCTAACTTGTCTGGTTGGCATTTCAAACTCGGGGATGGATATGAATATGAGTTTATTGAGAAGATTGTTGAACGTGTGTCAAGAAAGATTAAACATGCTGCTTTGCCAATTGCCGATTACCCAGTTGGACTGGAGTCACAAGTGTCAGAGGTAAATTCGCTTCTCCATGTTGGGTCTGATGGAGTTCACATGTTAGGGATCTATGGAATTGGTGGAATTGGTAAAACAACACTTGCTCTAGCGGTTTATAACTTGATTGCTGACCAATTTGAAGGTGTATGTTTTCTTGAAAATGTGAGAGAGAACTCAAACAAATATGGGTTACAATATCTCCAAGAGATCCTTCTTACTGAAATACTCGGAGAGAAGAAAATTAAGATAACAAGTGTAAGACAAGGCATTTCAATAATACAACAGAGGCTCCAACAAAAGAAGGTACTTTTGATTCTAGATGATGTTGACAAAATAGAGCAATTAGAGGCAATTATTGGAGGATCTAAATGGCTTGGTTTTGGCAGTAGAGTAATAATTATAACCCGAGATAAACATTTGTTATCATTGCACGGGGTTAACAAAACATACAAGGTAAAGAAGTTAAGTAAGAAGGATGCTCTTCAATTGCTTACTTGGAAAGCTTTTAAAATGGAAAAAGTTGATTCTAGTTACATGGATGTCTTGGATCAGGCAGTAACCTATGCTTCAGGACTTCCATTGGCTTTAGTAATAATAGGTTCCAACTTGTTTGGCAAAAATATAGAGGAATGGAAGTCTTTATTACGTCAATATGAAAGCATTCCTAATAAAGAGATCCATGAGATACTCAAGGTAAGCTTCAATGCTTTACAGGAAAATGAGCAAAGTGTTTTTCTTGATATTGCTTGTTTCTATAAAGGAAAACTAATTGGATTGGTGGAGGATATGCTTCATGCTCATTATGGTGATCGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTAATAAAGATTAGTTGGCCTCCTATAGTGACTCTACATGATTTGATCGAAGACATGGGTAAAGAAATTGTCCGACAAGAATCACCAAAAGATCCTGGGAAACGCAGTCGTTTATGGTGCCATAAAGATATAGTTCAAGTTTTAGAAGAAAATACGGGAACTAGAGCAATTGAAATGATATATTTGGAGTTCCTCTGTTCTGAAAATGTTGTTGAATTGGATGAAATGGCTTTCAAGAAGATGAAGAACCTTAAAACACTTATCATTAAAAATGGTCATTTTACAAAAGGACCCAAACACCTTCCAAACAGTTTAAGAGTACTTGAATGGTGGAGATATCCTTCAGAGTATTTGCCATCAAAGTTTCATCCAAAGAAACTTTCCATATTCAACTTACCCAAAAGTTGCTTAACATCAGTCCAATTGGTAGACTCAATACAGAAGTTTGTGAATGTGAGAGATTTGAATTTGGATGACACAGAGTGTTTGACACAAATACCTGATGTATCTTCTCTCCTAAATTTAGAAATTTTTTCATTTCAACGTTGTGAGAATTTAATTACAATTCACAATTCAATTGGGTTCTTGGATAAACTTAAAATCTTAAGTGCTTCTGGTTGTAGCAAGCTTAGGAGTTTTCCACCTATCAAATTGATCTCCCTTGAGCAACTCCATCTTTCATTTTGCTCAAGTCTTGATAGTTTTCCAGAAATATTAGGAAAGATGGAGAATATAACAAATCTTGTGTTGGATGAAACTTCCATACAAGAATTGCCATGTTCATTTCAAAACCTTGCTCGTCTTCAAACATTACAGATTCGTTTCTGTGGAATGCTTAAGTTACCAAGTAGTATTGTCATGATGCCGAAACTAGTTGAGATTATTGCTTGGAGATGGGATGGGTGGCTATTTCCTCATCAGGACGAAGGTGAAGAAAATGTGAGCTCAATGGTGTCCTCAAACATAGAATGTCTTCGCCTCTCTCATTGCAGCTTGTCACATGATTTTTTTTCAATTGGACTCAAGTGGTTTGGTAATGTGAAAGAATTAATGTTACCGAGCAATAATATCACAATTCTTCCAGAATGCATAAAAGAATTTCGCTTTTTAAAGAATATTTGTTTGGATGATTGCCGACATCTTCGAGAAGTTAGAGGGCTTCCGCCAAACATAGAAACTTTTTTTGCACGACGATGCAAATCTTTGACTTGTACAAACATGTTGCTGAGTCAGCAACTACATGAGCCTGGAAATACCATGTTTTATTTGCCAGGAGCAAGAATTCCAAATTGGTTTGAGCACCAAAGCAAGGAAGGGTCAATTTCTTTTTGGTTTCGTAACAAGTTTCCAGCGTTAGCTCTATGTCTTATCACTGGACCAATGTGTTGTGCGGCTGTAGCTACACCGGTCATGATCATCAATAGCAATGAACGTATCCCCGAGTCTAGGAATACTCATTTGTGGATAGAAGCAGAGCACACATATCTTTTTGATTTCGAAATGATAAAATTCGAAGATAATTTGGATGAAGCACTTTTAGAAAATGAATGGAACCACATCGAGATCACTTATTGGGACGCAAACAAGATCCCAGTCCTTAAAGAAATCGGAATCCATGTGTTCAAACAGAAAAGTAGCATGCAGGATGTTCGATTCACCAATCCTTATAGAAAGAGAAAATTAGATGATGATCTCGATCAATAG 3144 0.3709 MAESASSSSFNYGFTYDVFISFRGLDTRHGFTGNLYKALLNRGIHTFIDDEELQRGQEITPSLLKAIEESRIAIIVLSQNYASSSFCLDELVKILDCNKGKDDRLVWPIFYCVDPSDVRKQTGTYGEALSIHKERFGDNNERLQKWRMALQQVANLSGWHFKLGDGYEYEFIEKIVERVSRKIKHAALPIADYPVGLESQVSEVNSLLHVGSDGVHMLGIYGIGGIGKTTLALAVYNLIADQFEGVCFLENVRENSNKYGLQYLQEILLTEILGEKKIKITSVRQGISIIQQRLQQKKVLLILDDVDKIEQLEAIIGGSKWLGFGSRVIIITRDKHLLSLHGVNKTYKVKKLSKKDALQLLTWKAFKMEKVDSSYMDVLDQAVTYASGLPLALVIIGSNLFGKNIEEWKSLLRQYESIPNKEIHEILKVSFNALQENEQSVFLDIACFYKGKLIGLVEDMLHAHYGDRMKYHIGVLVEKSLIKISWPPIVTLHDLIEDMGKEIVRQESPKDPGKRSRLWCHKDIVQVLEENTGTRAIEMIYLEFLCSENVVELDEMAFKKMKNLKTLIIKNGHFTKGPKHLPNSLRVLEWWRYPSEYLPSKFHPKKLSIFNLPKSCLTSVQLVDSIQKFVNVRDLNLDDTECLTQIPDVSSLLNLEIFSFQRCENLITIHNSIGFLDKLKILSASGCSKLRSFPPIKLISLEQLHLSFCSSLDSFPEILGKMENITNLVLDETSIQELPCSFQNLARLQTLQIRFCGMLKLPSSIVMMPKLVEIIAWRWDGWLFPHQDEGEENVSSMVSSNIECLRLSHCSLSHDFFSIGLKWFGNVKELMLPSNNITILPECIKEFRFLKNICLDDCRHLREVRGLPPNIETFFARRCKSLTCTNMLLSQQLHEPGNTMFYLPGARIPNWFEHQSKEGSISFWFRNKFPALALCLITGPMCCAAVATPVMIINSNERIPESRNTHLWIEAEHTYLFDFEMIKFEDNLDEALLENEWNHIEITYWDANKIPVLKEIGIHVFKQKSSMQDVRFTNPYRKRKLDDDLDQ. 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02862 1047 Gene3D - 13 179 IPR035897 -
Seca11g02862 1047 Gene3D - 351 435 IPR042197 -
Seca11g02862 1047 Gene3D Ribonuclease Inhibitor 523 901 IPR032675 -
Seca11g02862 1047 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 159 IPR035897 -
Seca11g02862 1047 SUPERFAMILY "Winged helix" DNA-binding domain 421 529 IPR036390 -
Seca11g02862 1047 Pfam NB-ARC domain 200 433 IPR002182 GO:0043531
Seca11g02862 1047 Gene3D - 180 345 IPR027417 -
Seca11g02862 1047 PRINTS Disease resistance protein signature 386 400 - -
Seca11g02862 1047 PRINTS Disease resistance protein signature 293 307 - -
Seca11g02862 1047 PRINTS Disease resistance protein signature 696 712 - -
Seca11g02862 1047 PRINTS Disease resistance protein signature 217 232 - -
Seca11g02862 1047 SMART till_3 15 156 IPR000157 GO:0007165
Seca11g02862 1047 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 802 IPR044974 GO:0006952
Seca11g02862 1047 Pfam C-JID domain 903 1006 IPR045344 -
Seca11g02862 1047 SMART AAA_5 214 352 IPR003593 GO:0016887
Seca11g02862 1047 Pfam TIR domain 16 185 IPR000157 GO:0007165
Seca11g02862 1047 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Seca11g02862 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Seca11g02862 1047 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Seca11g02862 1047 SUPERFAMILY L domain-like 506 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02862 Seca-Chr11 54362725 54366709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02862 10 771 WRKY Transcription Factor Family AT4G12020 32.697 1.39e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02862 - - gmx:100780257 1302.35