Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02856 ATGGCAGAAGAGAGATTCACCGGCGTAGTGCAGTGGTTCAACAATGGCAAGGGTTTCGGCTTCATCAAGCCCGATGACGGAGGAGAGGATCTCTTCGTTCACCAATCCTCCATCAGATCCGACGGCTACCGCACCCTTCTAGAAGGCGATCGCGTCGAGTTCGCCATCGCTACCGGCGACAACGACAAGACCAAGGCCGTCGACGTTACTGGCCCCGATGGCGCCCCTCTCCAGGCCAGGAAGGACACCTACGGCGGCGGAGGAGGTCGCGGCGGAGGCGGATTCGGCGGCGGATGGAGGGGCGGCGACAGGCGCAACGGTGGAGGCGGAGGCGCTGGAGGTGCCGGCTGTTACCAGTGCGGTGACTTAGGGCACTTGGCCAGGGACTGCAACCGGAGCAATAACTCCGGTGCCGGCGCGTGCTTCAGTTGTGGTGGCGGCGGTGGCGTTGGAAGCACGTCTTGCTTTAGGTGCGGCGGGTTCGGGCACATGGCAAGGGACTGCGCCACCGCCAAGGGCGGAAGCGGCGGTGGAGTCAGCGGCGGAGGTTGTTTCCGGTGCGGGGAAGTCGGTCACTTGGCTAGGGATTGCGGCATTGAAGGCGGAAGGTTTGGCGGTGGCAACAGCGGTGGTGGTGGTGGCGGCAATGCAGGGAAAAGCACTTGCTTTAATTGTGGTTCGAATTCAGCTACATTCACAATAGTGAACAAATGCAGCTACCCTGTTTGGCCGGGAATTTTGTCCGGCGCCGGTACGGCACAGCTGGCAACGACGGGATTCGCCCTGCAACCGGGAGAGTCCAACGCCGTCACCGTGCCGGCGGCTTGGTCCGGCCGCCTATGGGGCCGCACGCTATGCTCCACGGACTCCACCGGAAAATTCTCCTGCGCGACGGGGGACTGCGGCTCCTCCAAAGTGGAATGCGCCGGCAGCGGCGCAATCCCGCCGGCGACGCTCGCGGAGTTCACCTTGAACGGTGCGGGGGGAATGGATTTTTATGACGTCAGCCTGGTTGACGGTTACAACCTTCCCATGATGGTGGAGGCGCGTGGCGGCGGTGGAAACTGCACGACGACGGGTTGCATGGTGGACTTGAATGGAGGGTGTCCGACGGAGCTTAAGGTGAAGATGGCGGCGGAGGGAGAAGGGAGTGGAGTGAAGAGCGTGGCTTGCAAGAGCGCGTGTGAAGCCTTTGGGGATCCACGGTATTGTTGCAGTGGCGCTTATGCGACACCTCAGACATGCAAGCCAAGCTCGTATTCGCAGTTCTTCAAGAGCGCGTGCCCACGCGCCTATAGCTACGCCTATGATGATGGCACTAGCACCTTCACTTGTGCCTCTGCGGATTACGTCATCACTTTCTGTCCTGCACCCTCCAAAAGTTCGATCAAGTCAGGGAATGGGAAATTCCCATTAGCAGTGGACTTCTCTGTAGGCCATGCCCATGTGGATGGGTCAGCCAATGTCATGGCGGTGGCTATTAGCGCTGTTTTAGTGACAATTTGGTGGCAACTCAATTGA 1521 0.6029 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGPDGAPLQARKDTYGGGGGRGGGGFGGGWRGGDRRNGGGGGAGGAGCYQCGDLGHLARDCNRSNNSGAGACFSCGGGGGVGSTSCFRCGGFGHMARDCATAKGGSGGGVSGGGCFRCGEVGHLARDCGIEGGRFGGGNSGGGGGGNAGKSTCFNCGSNSATFTIVNKCSYPVWPGILSGAGTAQLATTGFALQPGESNAVTVPAAWSGRLWGRTLCSTDSTGKFSCATGDCGSSKVECAGSGAIPPATLAEFTLNGAGGMDFYDVSLVDGYNLPMMVEARGGGGNCTTTGCMVDLNGGCPTELKVKMAAEGEGSGVKSVACKSACEAFGDPRYCCSGAYATPQTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYVITFCPAPSKSSIKSGNGKFPLAVDFSVGHAHVDGSANVMAVAISAVLVTIWWQLN. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02856 506 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Seca11g02856 506 Gene3D - 151 177 - -
Seca11g02856 506 FunFam THAUMATIN-LIKE PROTEIN 1 230 456 - -
Seca11g02856 506 ProSiteProfiles Zinc finger CCHC-type profile. 184 197 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 SUPERFAMILY Retrovirus zinc finger-like domains 148 198 IPR036875 GO:0003676|GO:0008270
Seca11g02856 506 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Seca11g02856 506 SMART csp_8 7 72 IPR011129 GO:0003676
Seca11g02856 506 Gene3D Thaumatin 235 456 IPR037176 -
Seca11g02856 506 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Seca11g02856 506 Gene3D - 1 83 IPR012340 -
Seca11g02856 506 ProSiteProfiles Thaumatin family profile. 229 456 IPR001938 -
Seca11g02856 506 SUPERFAMILY Osmotin, thaumatin-like protein 230 456 IPR037176 -
Seca11g02856 506 ProSiteProfiles Zinc finger CCHC-type profile. 155 168 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Seca11g02856 506 Pfam Zinc knuckle 116 130 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 Pfam Zinc knuckle 183 197 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 Pfam Zinc knuckle 155 169 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 ProSiteProfiles Zinc finger CCHC-type profile. 117 130 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 SUPERFAMILY Retrovirus zinc finger-like domains 107 148 IPR036875 GO:0003676|GO:0008270
Seca11g02856 506 PANTHER OS03G0233200 PROTEIN 229 456 IPR001938 -
Seca11g02856 506 PRINTS Pathogenesis-related protein signature 279 290 IPR001938 -
Seca11g02856 506 PRINTS Pathogenesis-related protein signature 446 455 IPR001938 -
Seca11g02856 506 PRINTS Pathogenesis-related protein signature 331 347 IPR001938 -
Seca11g02856 506 PRINTS Pathogenesis-related protein signature 231 243 IPR001938 -
Seca11g02856 506 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Seca11g02856 506 CDD TLP-PA 231 455 - -
Seca11g02856 506 Gene3D - 178 234 - -
Seca11g02856 506 Gene3D - 110 150 - -
Seca11g02856 506 Pfam Thaumatin family 236 456 IPR001938 -
Seca11g02856 506 MobiDBLite consensus disorder prediction 65 90 - -
Seca11g02856 506 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Seca11g02856 506 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Seca11g02856 506 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Seca11g02856 506 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Seca11g02856 506 SMART tha2 232 456 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02856 Seca-Chr11 54135356 54145167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02856 220 456 Receptor kinase-like Gene Family AT5G38280 54.583 3.69e-84 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca11g02856 Thaumatin 8.7e-84 CL0293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02856 - - gmx:100809419 488.804