Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02839 ATGATGCGAGAGAATGATAATAGGAATAAGGAGGGAGATGGTGAAGTTAACTTGAATTCCAGTAATGAAGACAATGTATGTTCTGATGATGTTGCTCCTGATGTGTTGAAAAGGATTTCTGAGTTAAGTGATGACGATATTAGATCGCTTGAATTTGATTCTGAAGAGGAAGCATATGAATTCTATAGTGAATATGCTAAATATAAAGGATTTGCTGTTAGGAAAGAGGACGTTATTCGTGATCGGAATAAGCGTATTAAAATGAGACAATTGGTATGTAATAGGCAAGGGGAGAGGAGTGAGAAGCATTTAAATAGAACTGATAGAATTAGAGAAGCTAAGGCCATTACTCGTACCAAATGCCTTGCGAGGATTCGATTGTACCTGGATAATAAAAGTAATAAGTGGAGGGTTGGAATGTTTGAGTCAGAACATAATCATGAGCTAACTCCTTCTAATATGGTACATTTGATGCCTGCTTATCGTGGCTTGAGTGTTGCTGATAAGGCACAAGTAAATAGTCTTCACTTGTACGGTGTAAGGACATGTCATATAATGGGGTTAATAATGGGTCAGAAGGGTGTTCATTCAGACCTGGGATTTTGTAAGAAGGACTTATACAATCACATTGGCAAGGAGAATAGGGCCAAAATAGAGGATGGAGATGCTTTTGCTGCTTTGTGCTATCTTCAAGCTAAGTATGATAGTAATCCAATGACATTTGTTAAGTTCACCACCACTGAAGATGACAGGCTTGAAAACTTATTCTGGGTTGATGTAGGCATTGATGAGAAGACAGAAACATATAAATGGGTGCTTGAAACTTTTCTTGAAGCCATGTTCAATAAAGCACCTAAGGCAGTTGTTACTGATGGGGATGGTGCCATGCGTGAAGCTATAAGGACTATTATTCCAGACGTTAATATATGCAAATTTTATCCTGAGAAGTTTGAGGAAGAATGGTTGAAAGTCGTTGAGAAACATGGGTTGAACAACAATAACTGGGTTAGGAAAGTGTATGACATGAAGAGGATGTGGGCTACTGCCTATTTCAGGGACAATTTTTTTGGTGGAATCAGGACTACGTCCATCTGTGAAGGTATTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAGTCTTGTAGATTTCCTTCATAATTTTGAGAGAGCTCTGAATGAATATAGACATAATGAGTTAGCTTCTGACTATAAGTCTACATACACCCAACCTGTTTTGACCATTGCCTTGGAAAAATATGAAGTTTATGCTTGTAAAGTCTATACCGGGAATAAATTTTTTGATGTTAGAAAGGAGATTGAGAAAGTTGCTGCCTTGAATCTGGTTGATAGGACTGAGTTAGGTAATATTGTCACAATGAAGATGAATAAGTTTGGAAGTCCGAATTCCCTGTATGTTGTGATTTATGATAGGTCTCTTGGTAAGTTGATTTGTGACTGTCACCTATTTGAATCATGTGGATTACCTTGCTCACATATTTTTTGTGCTATGAAACACGAGCAAATAGAATCAATCCCCTCTTCATTGATTTGCAAAAGGTGGACAAAGTTTGCTAAAGTTGATCAGGTTTCTGCTATTTATCATGAGGAAGGTGACACTTCAAAAAAGGAAGTGCTTAGGTCTGGTGCTGTTGGTGCTGCCTGTAACAGGCTTAACAAGGCTGCACATAAAATCCTCATAATTTTGTGA 1713 0.3754 MMRENDNRNKEGDGEVNLNSSNEDNVCSDDVAPDVLKRISELSDDDIRSLEFDSEEEAYEFYSEYAKYKGFAVRKEDVIRDRNKRIKMRQLVCNRQGERSEKHLNRTDRIREAKAITRTKCLARIRLYLDNKSNKWRVGMFESEHNHELTPSNMVHLMPAYRGLSVADKAQVNSLHLYGVRTCHIMGLIMGQKGVHSDLGFCKKDLYNHIGKENRAKIEDGDAFAALCYLQAKYDSNPMTFVKFTTTEDDRLENLFWVDVGIDEKTETYKWVLETFLEAMFNKAPKAVVTDGDGAMREAIRTIIPDVNICKFYPEKFEEEWLKVVEKHGLNNNNWVRKVYDMKRMWATAYFRDNFFGGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELASDYKSTYTQPVLTIALEKYEVYACKVYTGNKFFDVRKEIEKVAALNLVDRTELGNIVTMKMNKFGSPNSLYVVIYDRSLGKLICDCHLFESCGLPCSHIFCAMKHEQIESIPSSLICKRWTKFAKVDQVSAIYHEEGDTSKKEVLRSGAVGAACNRLNKAAHKILIIL. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02839 570 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g02839 570 ProSiteProfiles Zinc finger SWIM-type profile. 473 509 IPR007527 GO:0008270
Seca11g02839 570 PANTHER OS01G0519700 PROTEIN 262 307 - -
Seca11g02839 570 Pfam FAR1 DNA-binding domain 60 150 IPR004330 -
Seca11g02839 570 SMART 26again6 484 511 IPR006564 GO:0008270
Seca11g02839 570 Pfam MULE transposase domain 239 310 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02839 Seca-Chr11 53349439 53351379 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02839 FAR1 3.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02839 - - tpra:123910662 542.732