Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02806 ATGAGGCGAACGCGGAAATTCAACAGGGTTTCGTGGGCTACTGGTGGTAATCTGTGTCAGGTAAAATTGTTCTTGTCTGAGGATTACCCCTCAAAAGTTGGCCAGAAATTGCCAGATCATCTTCAGGCAAAGATATCATCATCAACATTACATTCTAGTACTAATGAATCTGATGATTTGCCCCCTGGGTTTGAAGGCAGTCATTTCCTGAACCGACCGAAGGTTGAATTCTCCAACATTTCCCAGATAAAATGGGAACGTCCTCCCCGGCTTGTTTTCAGTTCTCACTGGCGTGTTGCAGCTGGTGAAGAAAGTAGGGAGAGAGAGGCTCAGAAGCTGAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCCCGTATTTCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACACTACTCCTCTCGTCTCTATCATTCCCATTGAGGAGGAAGAGTCTATCAATTCCATAACATTACCCCACAATGTGCAGTCACAGAACTTGCAGCAATATATATCAGCAATGACTCCAATTAGTTCAGACTGCAACACCTCCCATACTGTTTCCTTTGATGCCTGTGGAGCGCTCTTATCTGGGGGGGTATCTCTTGGTTCGGAAGCAGACTTAGCAGCAGCTTCAGCTGTTGTAGCAGCCATCGTGAAGAGTAATGAGGAAGGGAGGTTAATAGATATGGATCTACTGGTTGAAATATTTAATGACCCAAAAATGATTGAGAAATTGACTAAAGAAAATAGAATTGCAACCACCACTGTAAGTGCATCCTCAAAAACTGTGGATATACCCTCTTCTGGATCAAAACCTGCTATTCCACCAGTTCCATTGTTGAATCCTACACCTGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCTGTGTCTGGTAAACCAGTATCTCCCTCAGTTTTTCTGCCTACTGCTACACCTGCACCTCATATGCTGAGGTCTGTCAACAATAATATTCACCATGTATCAAATGGAATACCAACTGCTTTAAATACCCAGCCTCGGCAAGATACAGTTATGGCATCCGGAATGAAGCGAGCTGCATCATTGCCCTCCATAGCTTCTAGTGAGCTAAGCTCTGTTACATTGCCTTCTGCTACTGGGAACTTGCACACTGTTGTGAATCAGGGGCAATCCACTGCTAGTACAATGCCTTACCAACTAAACACAGGTTCAGAATGTGCTGTAAAGGATGCCAACTATTATAAAAACCTCGTTAGGCAACATGGTGCAGATAAGCAGGACTCACAAATAGGTATCCGTCATAGTAACTTCCAAGATTTGAAACCAGTACATAACATTAACAAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGAAATGGTAACAATTGCCCCTATCAGCATGATGTATCAGTTCACAGGGGAGCTGGTAACGTCCTAGGGGCCCAGAATGCAAAAAGATTTAAATTATGA 1521 0.4339 MRRTRKFNRVSWATGGNLCQVKLFLSEDYPSKVGQKLPDHLQAKISSSTLHSSTNESDDLPPGFEGSHFLNRPKVEFSNISQIKWERPPRLVFSSHWRVAAGEESREREAQKLREMKVLEAVYPRISAIPPSPSVSLDVEEEDYDDNTTPLVSIIPIEEEESINSITLPHNVQSQNLQQYISAMTPISSDCNTSHTVSFDACGALLSGGVSLGSEADLAAASAVVAAIVKSNEEGRLIDMDLLVEIFNDPKMIEKLTKENRIATTTVSASSKTVDIPSSGSKPAIPPVPLLNPTPDKPATASVPLSRPVSGKPVSPSVFLPTATPAPHMLRSVNNNIHHVSNGIPTALNTQPRQDTVMASGMKRAASLPSIASSELSSVTLPSATGNLHTVVNQGQSTASTMPYQLNTGSECAVKDANYYKNLVRQHGADKQDSQIGIRHSNFQDLKPVHNINKGEVKHKIQKPCIYFKSSRGCRNGNNCPYQHDVSVHRGAGNVLGAQNAKRFKL. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02806 506 ProSiteProfiles Zinc finger C3H1-type profile. 460 487 IPR000571 GO:0046872
Seca11g02806 506 MobiDBLite consensus disorder prediction 266 313 - -
Seca11g02806 506 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 5 506 - -
Seca11g02806 506 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02806 Seca-Chr11 52419144 52425212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02806 82 152 Homeobox Transcription Factor Family AT4G02560 39.437 1.53e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g02806 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02806 - - gmx:102661587 620.157