Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02802 ATGAGAACTCGAAATGCCGATTCTTCCGCCAAATCCGCAACCCCGAAGAAGACACCGCCGGCGAGGAAATCCGCCACTAAATCCGCCGGAGAATCCCCTGCGGCAAAGCGCACGCCTGCCTCCAAAACAAGAAACGTGAAGAAGACGGAGGCATCGCCCACACCCGACCCGATATCCGATTCCAATCCTGATCAATCTCAGGGGCAGAAACCTGTGAAGAAGAGGGCACCAGGGAGACCGAGAACTAAAACGGTTGCCACTCCAAATTTGGTAGCAGCTGATGAAACTCCGATTATTGATAATTCTGAGGTAGAAGAGAAAGTGGAAGAACCTGGAGGTGTTGAAATTGTCAATGCAGATAATAATGAGAGTGAGAAAGAGGGGGAACAAGGTGTTGGGTCTGTTGGATTATCTGATGAGAAGGAACAAAAGTCTATGGAAGTGGATGAACCTGTTGTAAAAGAAGTTTGTGAATCGGCTGATAAGGGAAAGAGCACAGTGGGGGTTGAGGAGGAACAGAAGTCCATGGAAGTGGATGAACCTGTTGTTGAAGAAGCTTGTGAATCGGCCGCCGATAAGGGAAAGAGCATAATGGAAGTTGAGAAGGAACAAAAGTCCATGGAATTGGATGAACCTGTTGTTGAAAAAGTTTGTGAATCGGCTAATGAGGGAAAGAGCATAGTGGATGTTGAAGGAACTGCTTTGCAGGATGCTTCTGTTTCTTTTAAGCAACCAGGGCGTACTATTGTGGACCTCAATATATCTGTGGCTGATAATGAAGATTCTACTGGTGCAAAGGAGGGAGAGGAAGAGTTGAAAGAACCAGGGGAAGAAAAAGGACAGGAAGAGTTGAAAGAACGGGAAGGAGAGAAAGGAAAGGAAGGAATTAATGAACAGCAAGGAGAGAAAGGAAAGGAAGAGTTGAGGGAGCAGGAAGGAGAGAAAAGAAAAGAAGATTTGAAAGAACAGGAAGGAGAGAAAGGAAAAGAAGATTTGAAGGAACACGAAGGAGAGAAAGTAAATAAAGAGTTGAAGGAACAGGAAGGAGAGAAAGGAAATGAAGAGTTGGAGAAACAGGAAGGAGAGAAAGGAAGGGAAGAGTTGGAGAAACAGGAAGGAGAAAAAGGAAAGGAAGAGTTGAAGGAACAGGAAGGAGAGAAAGGAAGTGAAGAGTTGAAAAAACAGGGTCTAGAAAAAGAAAAGGGAGAAGAAACAACCATTATTGGACATGAAGAGCAGTCTAAGACTGAGTCTTTCAGTGTAGAAGTAAAAGCCCAGTTGAAAAAAGATGTTAATCTTGAAAAAGATGGTGATGAAGGAGAAAAGAGTAGTGAAAAGTTACATCTTGGAGAACAAGAGAGGGAGGAGTCTGTTGAAGAAGATCCGGAGGAACCTCCAGAAGAAACTGAGACATTGGTGGAGGAGCATATGGAATTGGAGGCAATTGCAAAACAGCGAAAGATTAAGAAAGAACATGAAATATTTGTTGGTGGACTGGATCGTGATGCTACAGAGGAAGATCTGAAAAAGGTTTTTCAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTACATAAAAATTCTTCTACAAATAAAAATAAGGGCTATGCTTTTGTAAAGTTTGCTAATAAGGAACATGCCAAGAAAGCTTTGTCTGAAATGAAGAATCCTGTTATAAATGGAAAACGATGTGGCACTGCTCCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACGTGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTGTTGAAGGGGTTGAAAACATTACTCTTGTCCCAGATGCTCAACATGAAGGCTTGAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCATGGTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGCCATACTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGTCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCTCACTGGGACGAAGATCACGTGAGGGAGCTGTTAAAATCTTATGGTGAAATTGTAAGAATTGTTTTAGCACGGAACATGTCTACAGCTAAAAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTGGATGGTGTAAATAAATCAGAATTGGGTGATGTGGCATCAAAGATAAAAGTGAGAGCTAGGCTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGTGGCATGTGTGGTGGGTTTCGAATTGGTCATACTAGGAGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAGCCCTTCAACAACTGGGGAAATTTCAACAGGGACAGGAGTTTCTATCACGGTGGACACAGCCAAATTGGAAGGACGGGTTTTCGGGATGACCGTGATTTTAATATGTATCCTGATTTCCGTCAGAGGCAATTTGGTCCACAAGGAGCTATGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACCTTATCATGATAGAGCATGGTATGGTATCCCTGATGGCGCCCCTAGTGAGCCTATTCCCCCAAGAAGGCCCTACTCCCCTGGCCCTGGTGGACAGTTTGATGCACCTCTTATGGGGAGGCATTTTGAAGATCCATATCTATATGATGACAATATGCATGGGTCGAAACGTCCATTTTATATGACTGACCCTGAACCTGACTACATGGGGCCTAATAGACTTCGCCCCCGATTGGATTATGCAGATCCATCTATATTTCGTGGAACTCGTTACAATGATTCTTTTGGGGCTGGTAGCAGACATTATCCACATGACTATTATGGTTCTGATTATGGTGGAGGTCCATACTCATCTTTTTATGGGGGCGATGCCTCACATGGGCATGGATACTATTATTAG 2970 0.4401 MRTRNADSSAKSATPKKTPPARKSATKSAGESPAAKRTPASKTRNVKKTEASPTPDPISDSNPDQSQGQKPVKKRAPGRPRTKTVATPNLVAADETPIIDNSEVEEKVEEPGGVEIVNADNNESEKEGEQGVGSVGLSDEKEQKSMEVDEPVVKEVCESADKGKSTVGVEEEQKSMEVDEPVVEEACESAADKGKSIMEVEKEQKSMELDEPVVEKVCESANEGKSIVDVEGTALQDASVSFKQPGRTIVDLNISVADNEDSTGAKEGEEELKEPGEEKGQEELKEREGEKGKEGINEQQGEKGKEELREQEGEKRKEDLKEQEGEKGKEDLKEHEGEKVNKELKEQEGEKGNEELEKQEGEKGREELEKQEGEKGKEELKEQEGEKGSEELKKQGLEKEKGEETTIIGHEEQSKTESFSVEVKAQLKKDVNLEKDGDEGEKSSEKLHLGEQEREESVEEDPEEPPEETETLVEEHMELEAIAKQRKIKKEHEIFVGGLDRDATEEDLKKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVINGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDAQHEGLSRGFAFLEFSCHGDAMLAYKRLQKPDVIFGHTERTAKVAFAEPIREPDPEIMSQVKSVFINGLPPHWDEDHVRELLKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDVASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHTRSGAFPRSGRGFGRGRQPFNNWGNFNRDRSFYHGGHSQIGRTGFRDDRDFNMYPDFRQRQFGPQGAMRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGAPSEPIPPRRPYSPGPGGQFDAPLMGRHFEDPYLYDDNMHGSKRPFYMTDPEPDYMGPNRLRPRLDYADPSIFRGTRYNDSFGAGSRHYPHDYYGSDYGGGPYSSFYGGDASHGHGYYY. 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02802 989 Gene3D - 657 816 IPR012677 -
Seca11g02802 989 SMART rrm1_1 671 744 IPR000504 GO:0003723
Seca11g02802 989 SMART rrm1_1 493 566 IPR000504 GO:0003723
Seca11g02802 989 SMART rrm1_1 573 650 IPR000504 GO:0003723
Seca11g02802 989 SUPERFAMILY RNA-binding domain, RBD 661 775 IPR035979 GO:0003676
Seca11g02802 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 572 657 IPR000504 GO:0003723
Seca11g02802 989 Gene3D - 410 565 IPR012677 -
Seca11g02802 989 Gene3D - 571 656 IPR012677 -
Seca11g02802 989 CDD RRM_SF 494 563 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 1 181 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 140 181 - -
Seca11g02802 989 SUPERFAMILY RNA-binding domain, RBD 493 637 IPR035979 GO:0003676
Seca11g02802 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 492 570 IPR000504 GO:0003723
Seca11g02802 989 FunFam Heterogeneous nuclear ribonucleoprotein Q 572 656 - -
Seca11g02802 989 CDD RRM_SF 672 746 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 45 69 - -
Seca11g02802 989 FunFam Heterogeneous nuclear ribonucleoprotein Q 447 566 - -
Seca11g02802 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 672 738 IPR000504 GO:0003723
Seca11g02802 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 574 644 IPR000504 GO:0003723
Seca11g02802 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 562 IPR000504 GO:0003723
Seca11g02802 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 670 750 IPR000504 GO:0003723
Seca11g02802 989 Coils Coil 342 371 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 456 472 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 243 472 - -
Seca11g02802 989 FunFam Heterogeneous nuclear ribonucleoprotein Q 657 808 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 262 455 - -
Seca11g02802 989 Coils Coil 380 400 - -
Seca11g02802 989 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 300 989 - -
Seca11g02802 989 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02802 Seca-Chr11 52290851 52299104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02802 494 738 Eukaryotic Initiation Factors Gene Family AT2G23350 24.206 2.18e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02802 - - gmx:100819035 971.459