Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02782 ATGGAATTTGATTTGTTGTTGTGTGTTTGTTTCCTTATTATTGAACCATTCAAGCTTGATTTTGGAATTTTGAACTTTGTGTGTCTTTTTGAATTAATCTCTTTTATTAACCAGGTTTTCATATCCATTGCATGTAATACTGTAAATCAGATCCATTTGGTCAAGTTCAAAGTTGAAAGAGAAGAGATGGCTGGGCAATCAGACCATGAGCTCTCACTGTTTTCAGCAGAGGAGCTTGAGTTCATTTCTGAGGATGAGATCGTAGACATTGTACCCAATCTCAAAATGGATCCTCTCTGTCTCATCTCCGGAGATTTTGGCCCATTTACGCCACAGATTGTTACTCAAGTGCCACTGTGGCTGGCTATTGCTCTCAAGAAGAGAGGCAAATGCTCCATTCGCCCTCCTCAGTGGATGTCTGTTGAGAAGTTGACTCAAGTTTTGGAGGCAGAACGAGACTCTCAAGAAATGTCAGATCAATTGCCATTTCATTATGTAGAAATCTCAAGACTTCTTTTTGATCATGCTCGTGACAACATTCCTGATGTATATATGGTGAGGTCTCTAATTGAGGACATCAGAGATGTAAGGTTTCATAAAGTTGAAACTGACTTGGAGGCATTTAATGGACGTACAATTGCTGTTAAGGTAATTGTCCAAGTTTTTTTGGGGTGTTTATTTGGAGAAGTCTGTAATGCAGCTCTGATTGTAAAGGGCATCTTTTTATCAGAATTCAAGTTTTTTGATCTACCGATAGAATTTTATGCTACCAGTATAAAAAATTTATCTGCAATGGAAGTGAATATTGTTCGCCCATTTATTGGAAGAGCTTTACAGGCATTTTATAAGCATGATAATCCAGAGTTGATCCCGGATCCAGAGAGAGTGTCAGACAGACGGACGCAAGTTGTCAGCAATGTCCCAAGAGAAATGGTTTTCATGCAACTGATATTTGCTTTTGCAGAGGCAACTTCGAAGATAAATATGTATTACTTTTCTGGTAATATCTCTTCTAGAATTGTAACATCTGGCTGGCTTCAAAGATACATCATTCCTCAGAAGTACTCCACAGCTATCTTTGCTGCTGATTTCATTGTAAAAAGGTAG 1107 0.383 MEFDLLLCVCFLIIEPFKLDFGILNFVCLFELISFINQVFISIACNTVNQIHLVKFKVEREEMAGQSDHELSLFSAEELEFISEDEIVDIVPNLKMDPLCLISGDFGPFTPQIVTQVPLWLAIALKKRGKCSIRPPQWMSVEKLTQVLEAERDSQEMSDQLPFHYVEISRLLFDHARDNIPDVYMVRSLIEDIRDVRFHKVETDLEAFNGRTIAVKVIVQVFLGCLFGEVCNAALIVKGIFLSEFKFFDLPIEFYATSIKNLSAMEVNIVRPFIGRALQAFYKHDNPELIPDPERVSDRRTQVVSNVPREMVFMQLIFAFAEATSKINMYYFSGNISSRIVTSGWLQRYIIPQKYSTAIFAADFIVKR. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02782 368 CDD GINS_B_Psf2 75 136 - -
Seca11g02782 368 Gene3D - 140 290 - -
Seca11g02782 368 Gene3D - 74 139 - -
Seca11g02782 368 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 69 305 IPR007257 GO:0005634|GO:0006260
Seca11g02782 368 FunFam DNA replication complex GINS protein PSF2 140 220 - -
Seca11g02782 368 Pfam GINS complex protein 115 211 IPR021151 -
Seca11g02782 368 SUPERFAMILY PriA/YqbF domain 74 133 - -
Seca11g02782 368 CDD GINS_A_psf2 128 286 - -
Seca11g02782 368 FunFam DNA replication complex GINS protein PSF2 74 139 - -
Seca11g02782 368 SUPERFAMILY GINS helical bundle-like 135 210 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02782 Seca-Chr11 52089833 52093625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02782 63 209 Core DNA Replication Machinery Family AT3G12530 68.707 2.09e-72 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02782 K10733 - gmx:100780528 353.984