Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02781 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACCGATGGAGAGCTAGTTGGTTATTATCTGAGGAAGAAAGTAGCTTCTCAGAAGATTGATCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGAATGAGGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAGTATCCAACTGGGACAAGAACTAACAGAGCTACGACTACAGGGTTCTGGAAAGCTACAGGAAGAGACAAGTCAGTGTATGAAAGGACAAAACTCATTGGTATGAGGAAAACTCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACGGATTGGATCATGCATGAGTATAGGCTTGAAACTCTAGAGAATGCACCTCCACAGGAGGAAGGATGGGTTGTATGCAGAGCATTCAAGAAAAGAACTAACACCCAAACAAAGACTATTGAAGGATGGGATCCAAGTTACTTACATGATGAACAAGCAAGTGGTGCAAGTACCTCCATGATGGACCCAATTGATCATCTCATCTTAAGGCAACCTCAGAGGAATATTTCACCTCAAAATTTCTTGTACAAGCAAGAGATCATAGAAACAGATAATAACATAGGCTTCATGCATCCAGAGCAATTAATACAACTTCCTCAGCTAGAAAGTCCCTCTTTGCTAAAGAGGCAACAAATTAATGATGATGATCAAAATGTAGGGTTATCCAACACAGAGAAAGTGACTGATTGGAGGGCTCTTGACAAGTTTGTGGCTTCTCAATTGAGTCAAGAACATAGGCATGAAACAGGTGATGGAGTAGTGTCAAGATTTGAAAGCGATTTTCATAACAGCTCAGACATGGCATTGATGCTATTGCAGAGTAGTAGGGATGAAGGGAACAAGTTAATAAGCCCGTTTTTTAATTCAAGCTCAGACTGTGACTTTGGGATATGCGTATTTGATAAATGA 1002 0.4122 MMESCVPPGFRFHPTDGELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGNEEQNEWYFFSHKDKKYPTGTRTNRATTTGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETLENAPPQEEGWVVCRAFKKRTNTQTKTIEGWDPSYLHDEQASGASTSMMDPIDHLILRQPQRNISPQNFLYKQEIIETDNNIGFMHPEQLIQLPQLESPSLLKRQQINDDDQNVGLSNTEKVTDWRALDKFVASQLSQEHRHETGDGVVSRFESDFHNSSDMALMLLQSSRDEGNKLISPFFNSSSDCDFGICVFDK. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02781 333 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Seca11g02781 333 FunFam NAC domain-containing protein 15 159 - -
Seca11g02781 333 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca11g02781 333 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Seca11g02781 333 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Seca11g02781 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02781 Seca-Chr11 52078123 52081805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02781 2 332 NAC Transcription Factor Family AT2G18060 58.356 2.61e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g02781 NAM 7.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02781 - - aprc:113869508 496.893