Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02748 ATGAAAAAACTCAATTCAGTTGTTTATATCAGTAACTATGAAAAGGAATTGGAAGACATGAAGCACATGACTAGACAAGAATTTGTGGCCGCCGTAAGAAGGAAGAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGAAAGCAAGGATTGGCAGGGTTGCAAGAAACAAAGATCTATATTTAGGAACTTTCAGTACTGAAGAAGAGGCTGCAGAAGCATACGACATTGCTGCAATAAAGTTCAGAGGTCTTAATGCCGTAGTGAGCCGCTTCAGTGCCTTCGAGAGCCTCCATGAGACGGCTGAGGTTCAGGGACGGTGA 357 0.4454 MKKLNSVVYISNYEKELEDMKHMTRQEFVAAVRRKSSGFSRGASMYRGVTRHHQHGRWKARIGRVARNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVVSRFSAFESLHETAEVQGR. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02748 118 SUPERFAMILY DNA-binding domain 44 99 IPR016177 GO:0003677
Seca11g02748 118 SMART rav1_2 45 109 IPR001471 GO:0003700|GO:0006355
Seca11g02748 118 CDD AP2 44 99 IPR001471 GO:0003700|GO:0006355
Seca11g02748 118 FunFam AP2-like ethylene-responsive transcription factor 44 105 - -
Seca11g02748 118 ProSiteProfiles AP2/ERF domain profile. 45 104 IPR001471 GO:0003700|GO:0006355
Seca11g02748 118 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Seca11g02748 118 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Seca11g02748 118 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02748 Seca-Chr11 50787948 50788843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02748 27 108 AP2-EREBP Transcription Factor Family AT5G57390 32.967 1.02e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g02748 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02748 K09285 - sly:101252050 170.629