Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02743 ATGGAGTGTATGGAAGCAGCGCTGAAGAGCAGTTTTAGGAAAGACATGTCCATGAAACTCACCCCCCAAACGTTGTTCCAAGAGGAGTTGTCGGTGTTTAATGTGCAAAATGTTGCTTCTTGCGACGACTTGTTTGTTGACGAACTCCTTGACTTTTCGCACGAAGAAGGTCTCTTCGAAGAAAAAGAAGAAAAACCCGAACCACAAAACAATGCTTCTTCTTCCCCTGTTTCCCCTCAGAACCAGAACCAAAGCAACCAAATTTGCTACCCCTCATTCAACGACCAATTTGGCTCTTTACCCACCAGCGAACTCAGCGTTCCGGATGAAGATGCTGCGGACTTAGAATGGTTATCTCATTTCGTTGAGGATTCCTTCTCGGAACACTCTCTTACCTTCCCAAACGCAACGTTAACGGAGAACCTCACAGCGAAAGCGCCTGAACCGGTTTCGGTTCAACCCTGTTTCAAAACCCCGGTTCCGGCGAAGGCAAGGAGCAAGCGAACCAGAACCGGTGTTCGGGTCTGGCCACAGCCACTAAGGTCCTCTTCTTTCACTGAGTTATCTTCAACCTCAAGCTCCACAACCCCTTCTTCCTCTTCCTCCTCCACACCCTCGAGCCCCTTGCTAATTTGCGCCGCAAGCCTCGAGCAGGGTTGTTCGGAGATGAAGCCGCCGGAGAAGAAGGTGAAGAAGAGGGCCTCGCCGGAAGGTGGCGCGGTGGCGCCAAGGCGGTGTAGCCATTGTGGGGTTCAGAAAACCCCTCAGTGGCGAACCGGACCGCTTGGACCGAAAACACTGTGTAACGCTTGTGGGGTCCGTTACAAGTCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGCCCAACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCGGAAGAAGGAGGTAACGGCTGAACCGGTTACCTGTTTAGCACCACATCCGGTTGTTCCCGGTTTTTGA 993 0.5237 MECMEAALKSSFRKDMSMKLTPQTLFQEELSVFNVQNVASCDDLFVDELLDFSHEEGLFEEKEEKPEPQNNASSSPVSPQNQNQSNQICYPSFNDQFGSLPTSELSVPDEDAADLEWLSHFVEDSFSEHSLTFPNATLTENLTAKAPEPVSVQPCFKTPVPAKARSKRTRTGVRVWPQPLRSSSFTELSSTSSSTTPSSSSSSTPSSPLLICAASLEQGCSEMKPPEKKVKKRASPEGGAVAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAEPVTCLAPHPVVPGF. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02743 330 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355|GO:0043565
Seca11g02743 330 CDD ZnF_GATA 245 293 IPR000679 GO:0006355|GO:0043565
Seca11g02743 330 MobiDBLite consensus disorder prediction 69 88 - -
Seca11g02743 330 MobiDBLite consensus disorder prediction 151 207 - -
Seca11g02743 330 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355|GO:0043565
Seca11g02743 330 PANTHER GATA TRANSCRIPTION FACTOR 36 317 - -
Seca11g02743 330 MobiDBLite consensus disorder prediction 176 207 - -
Seca11g02743 330 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355|GO:0043565
Seca11g02743 330 SMART GATA_3 240 294 IPR000679 GO:0006355|GO:0043565
Seca11g02743 330 MobiDBLite consensus disorder prediction 222 245 - -
Seca11g02743 330 PIRSF Txn_fac_GATA_plant 3 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca11g02743 330 MobiDBLite consensus disorder prediction 58 88 - -
Seca11g02743 330 Gene3D - 239 314 IPR013088 GO:0006355|GO:0008270
Seca11g02743 330 FunFam GATA transcription factor 235 320 - -
Seca11g02743 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02743 Seca-Chr11 50505805 50507407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02743 5 321 C2C2-Gata Transcription Factor Family AT5G66320 48.830 2.08e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca11g02743 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02743 - - aprc:113869559 369.777