Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02702 ATGGCGGGGTTATTCTCATTAGGAGGAGGAGGGAGAGGGAACCAAGAAGGTGAACACCACCAGAACAACAACGAGATTCCTCCTCCAGAGACGCTGTTCTGGTACAACAAAAACGACGACGTTTCCTCTTACCGAGGGTTAGAGCTATGGAACCAGCAACAGCAAGAAGCGGAGCAGGTGATAGCGCATGCGCGACCTCTCCTCCACCGAGATCTCTACTCTTTAGGTGTGGGCCCCAGCAGAGTGTCCTCCGATGACCAGTCGTCGTCGAGATCGGCCTTCATGGCGATGAGGTCAGCCGTAGAAAGCGGCGGAGGAAGCGGGGGAGGGATAAGCTGCCAAGACTGTGGGAACCAAGCGAAGAAAGATTGCCCTCACATGCGGTGCAGAACTTGCTGCAAGAGCCGCGGTTATGAGTGCCAAACACATGTGAAAAGCACTTGGGTTCCCGCTTCAAAACGCCGCGAACGACAACAACAACTCGCAGCTTTGCACAGAGACATTTCCAAAAGGCCGAGAGATACTAATAACCCAACCACCACTACTTCTTCCACTCGTAATTTGCCCTCAGGAAAACAAAAAGGGTTAGAGCAAGGACATTTTCCTTCTGTGGTGAGTTCTCCAGCGGAGTTCAGATGCGTGAGGGTTAGCTGCGTGGAGGACGCTGATGACAGGTACGCATATCAAACGGCTGTGAACATTGGAGGGCATGTCTTCAAAGGAATCCTCTATGACTATGGTCCAGACAATAATAATAATAATAATTATATGACTGGTGAGACCTCTTCCACCGCTATTGGCGGAACTCAACCGTTAAACCTCATCGCTGCCTCCACTGGAGCTGTTGTCTCATCTTCTGGGGCACTTGTTGATCCTTCTTCCATGTATTCAGCTCCAGTTAACACCTTCATGGCTCCTAGTGGTACGCAATTCTTCCCTCGTCCAAGATCTTGA 954 0.5084 MAGLFSLGGGGRGNQEGEHHQNNNEIPPPETLFWYNKNDDVSSYRGLELWNQQQQEAEQVIAHARPLLHRDLYSLGVGPSRVSSDDQSSSRSAFMAMRSAVESGGGSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALHRDISKRPRDTNNPTTTTSSTRNLPSGKQKGLEQGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPDNNNNNNYMTGETSSTAIGGTQPLNLIAASTGAVVSSSGALVDPSSMYSAPVNTFMAPSGTQFFPRPRS. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02702 317 MobiDBLite consensus disorder prediction 150 202 - -
Seca11g02702 317 MobiDBLite consensus disorder prediction 158 173 - -
Seca11g02702 317 NCBIfam LRP1 C-terminal domain 200 248 IPR006511 -
Seca11g02702 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 301 IPR007818 GO:0003700|GO:0006355
Seca11g02702 317 Pfam Domain of unknown function (DUF702) 110 249 - -
Seca11g02702 317 MobiDBLite consensus disorder prediction 1 30 - -
Seca11g02702 317 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Seca11g02702 317 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02702 Seca-Chr11 49129758 49131362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02702 1 304 C2H2 Transcription Factor Family AT5G66350 47.041 4.51e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca11g02702 DUF702 3.7e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02702 - - gmx:100781981 364.385