Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02700 ATGGGGACTGATAAACCTATTCTTACTTCATGTGGAATGAAGAGCATTGGAGTGAAGAACTCCCTTGTGTTTTACAAGGGACGTCCACCAAAAGGATCTAAATCTGATTGGATCATGCATGAGTATATGTTGCATGATTCAATGATCTCAATTTCCAAGCAAAGAGGGTCTATGAGAGTAGGTCAATTGCATGACTTCAGTCCCAATTTCTATAGCCACAATACAAAGACACCAAAGGGCTTCAACATTACAAATTGGCATAATTGGGTTATTTGA 276 0.3877 MGTDKPILTSCGMKSIGVKNSLVFYKGRPPKGSKSDWIMHEYMLHDSMISISKQRGSMRVGQLHDFSPNFYSHNTKTPKGFNITNWHNWVI. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02700 91 Pfam No apical meristem (NAM) protein 2 44 IPR003441 GO:0003677|GO:0006355
Seca11g02700 91 Gene3D NAC domain 1 90 IPR036093 GO:0003677|GO:0006355
Seca11g02700 91 PANTHER NAC TRANSCRIPTION FACTOR 56 2 56 - -
Seca11g02700 91 ProSiteProfiles NAC domain profile. 1 66 IPR003441 GO:0003677|GO:0006355
Seca11g02700 91 SUPERFAMILY NAC domain 2 48 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02700 Seca-Chr11 49091478 49091888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02700 2 62 NAC Transcription Factor Family AT1G69490 60.656 4.81e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g02700 NAM 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02700 - - lja:Lj1g3v4579400.1 114.005