Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02692 ATGTCAATGGAAGCGCCGAAGCGCGACCAGTGGCAGTGGGAGAACGCCACTGCTGGCGCCGCCGCCGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGACGTTGTCCGAACTAGGTTCCAAGTTAACGATGGTAGAGCCTCTCATCTTCCCAGTTACAAGAACACCGCTCACGCTGTTTTCACCATTGCTCGCTCTGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTCTTTTTCTATGACAAGGCTAAACAAAGATATGCTAGGAACAGAGAGGAAAAGTTGACCCCAGGTCTTCATCTTGCCTCAGCTGCAGAAGCAGGAGCTTTGGTTTGCTTGTGCACAAATCCTGTTTGGCTAGTGAAGACAAGATTACAGCTTCAGACTCCTCTTCATCAGACAAGACCATACTCTGGGCTTTATGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGGATTGTTCCTGGTCTATTTCTGCAGGTGTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTTCGTAAAATTATTTTCGATTTGAAGAGTAAAGGAAGTAAAATACACCATCAAAACCCTGATCAATTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAAATTGCTGCAATACTTCTGACCTATCCCTTTCAGGTTATACGGTCTCGATTGCAGCAACGACCTAGTGGTGATGGGGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGGTACATATTAAAATGCATCCATATTTATTTTGCATCTTTAAATTGA 861 0.446 MSMEAPKRDQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRASHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREEKLTPGLHLASAAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRPYSGLYDAFRTIMREEGFSALYRGIVPGLFLQVSHGAIQFTAYEELRKIIFDLKSKGSKIHHQNPDQLLNSVDYAVLGATSKIAAILLTYPFQVIRSRLQQRPSGDGVPRYMDTWHVVKETARYILKCIHIYFASLN. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02692 286 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Seca11g02692 286 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Seca11g02692 286 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 273 IPR044712 GO:0006862|GO:0055085
Seca11g02692 286 Gene3D Mitochondrial carrier domain 2 106 IPR023395 -
Seca11g02692 286 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Seca11g02692 286 FunFam Folate transporter 1, chloroplastic 106 277 - -
Seca11g02692 286 Pfam Mitochondrial carrier protein 221 272 IPR018108 -
Seca11g02692 286 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Seca11g02692 286 Pfam Mitochondrial carrier protein 110 200 IPR018108 -
Seca11g02692 286 SUPERFAMILY Mitochondrial carrier 12 272 IPR023395 -
Seca11g02692 286 Gene3D Mitochondrial carrier domain 107 276 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02692 Seca-Chr11 48283239 48297977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02692 32 251 Chloroplast and Mitochondria Gene Families AT2G47490 39.648 1.20e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02692 K15115 - gmx:100809599 496.508