Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02667 ATGTTTTCCACCAGAGACATAGCTTCACCATCCACAATCTTCTCCACTTATGCTTCCATGACAGCCTCTATTATGCTTCTTCGTTCAATGGCCAACGACCTCATACCTCAACCAATTCGTGGCCACCTCATCAATGCTTTCCACTACTTCATCAAGCCTCGTTCCCACACTCTCACACTCACCATAGAAGAGTATTCCAATGACATAGTCCGAAACCAAGTCTATGATGCAGCAGAGGCTTATTTATCCACCAAACTCACCCCTGAAAATGAAAGGCTCAAGATCAGCAAGAGTCCAAAGGAGAAAAAAATGACCATTCGATTAGAAAAAGGTGAAGGGTTAATTGATTTCTATGATGGGGTTAAGCTCAATTGGAGATTCATTTGCTCTGAATCCGAGAAGAACAACCCCAATGATCGAAACAAAAGTAAGATGGAAAAAAGGTATTTTGAGGTGAGTTTTGACAAGAAGCATAAGGAGATTGTATTGGAGTCTTATCTTCCTTTCATTCTTGAGAAAGAGAAAGAGATGAAGGAAGAGGAAAGGGTGTTGAAGATGCATACTCTCAACACTTGTTATGGTTTTGGTGGGTTTAAATGGGATTCTATTAATTTGGATCACCCATCAACATTTGAGACTCTGGCTTTGGAGCCAGAGTTGAAGAATGAGGTGATTGAGGATTTGAATAGGTTTTTGAGGAGGAGGGATTTTTATAAGAAAGTTGGAAGGGCATGGAAACGTGGGTATTTGTTGTATGGTCCTCCGGGTACTGGAAAATCTAGCTTGATTGCAGCTATGGCTAATTACTTGAAGTTTGATATCTATGATCTCCAACTTGATAACTTGGTAACTGATTCTGACCTGAGAAAGTTGTTGCTGGCAACTGCAAATAGGTCTATTTTGGTGATTGAAGATATTGATTGTAGTGTGGATTTGCCACGGCGTCGACATGGAGATGGACCTAAACAAGCTGACATACAGTTGAGTTTGTCTGGATTACTTAACTTCATTGATGGGCTATGGTCAAGTTGTGGAGATGAGAGAATCATCGTACTTACAACTAACCATAAGGAAAGGCTAGACCCAGCATTGTTGAGACCTGGGAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCACGGATTCAAGGTTTTGGCCTCAAATTACTTGGATGTTTCCCATCACCACCTCTTTGGGGAGATTGAAGGGCTAATAGAAGACACACAAATAACCCCTGCACAAGTGGCAGAGGAATTGATGAAGAGTGAAGATGCTGACGTGGCACTCAATGGATTCGTGAAGCTACTTAAACGGAAGAAGATGGAAGGTGATGTGTGTCATAATGATGGTCCAGACAAAGCAGAAATTCAGCAATCTAAAAGGCTTAAAGTTGGTTGCAAGCAGAAAAGTGCTGTGGGTACAAAAAGAAGGACAAGAAAAGGGCGCACTTTGTAA 1461 0.4155 MFSTRDIASPSTIFSTYASMTASIMLLRSMANDLIPQPIRGHLINAFHYFIKPRSHTLTLTIEEYSNDIVRNQVYDAAEAYLSTKLTPENERLKISKSPKEKKMTIRLEKGEGLIDFYDGVKLNWRFICSESEKNNPNDRNKSKMEKRYFEVSFDKKHKEIVLESYLPFILEKEKEMKEEERVLKMHTLNTCYGFGGFKWDSINLDHPSTFETLALEPELKNEVIEDLNRFLRRRDFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLDNLVTDSDLRKLLLATANRSILVIEDIDCSVDLPRRRHGDGPKQADIQLSLSGLLNFIDGLWSSCGDERIIVLTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKVLASNYLDVSHHHLFGEIEGLIEDTQITPAQVAEELMKSEDADVALNGFVKLLKRKKMEGDVCHNDGPDKAEIQQSKRLKVGCKQKSAVGTKRRTRKGRTL. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02667 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 427 IPR027417 -
Seca11g02667 486 Gene3D - 199 374 IPR027417 -
Seca11g02667 486 Coils Coil 170 190 - -
Seca11g02667 486 Gene3D - 375 445 - -
Seca11g02667 486 SMART AAA_5 245 380 IPR003593 GO:0016887
Seca11g02667 486 Pfam ATPase family associated with various cellular activities (AAA) 250 377 IPR003959 GO:0005524|GO:0016887
Seca11g02667 486 ProSitePatterns AAA-protein family signature. 348 366 IPR003960 GO:0005524|GO:0016887
Seca11g02667 486 PANTHER BCS1 AAA-TYPE ATPASE 15 443 - -
Seca11g02667 486 Pfam Domain associated at C-terminal with AAA 35 128 IPR025753 -
Seca11g02667 486 CDD RecA-like_BCS1 224 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02667 Seca-Chr11 47847746 47851571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02667 247 380 Calmodulin-binding Proteins AT3G56690 28.169 4.75e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02667 - - gmx:100812263 777.704