Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02639 ATGTCACTGAAAAGCATAGTTCGTGAACTCAAAGAGATTAGAGATGGAATAGGTAGCATATCAAGGCGGGGTGGAGAAAGCAGGCATTGGCTCAGTAGGACAAAGTCACATGTTGCTCCAGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGGCAATGGGCAAATCTACCGCCAGAATTGCTTTCGGACATAATCCGAAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCAAGGGCTGTGGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAAAGAGATTGTCAAGACTCCTGAACAGTGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAATGCTTCATCAGGAGGAATAGAGAAACTTCCTCATATCTATTGTACTTTGGTCTGGTGCCATTTAAGAAGCTTGTTTTGTTTTGTTTTGATTTTTATTGTACAGCGGAGAATGAAGGTAATAAGTTGTTATTAGCTGCCAAAAAGATGAGAAGGGCAACAGGCACCAACTTTGTCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAACAAATACGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACTATACACGACAGTCAACCTCCACATGATGCTGCAATTCAACCAAATTGTCGATCTAGTAGGAGATTTAATTCTAAGCAGATGTCACAAAGAATTCCAGCATGTAACTATCTTGTTGGTACCGTTTCCTATGAGCTGAATGTTCTCTGCACTAGAGGTCCAAGAAAAATGCACTGCATCATGAACTCTATACCTGTCTCTGCTATTCAAGGGGGCAACATCCCAGCTTCAACATCTTCCCCACAAATATTCGACAAACCTTGTTCTCCCTCACCAGCACTGAAAGGAAAAGCTCCAACTACAGATTTAAACTCTGCAAGCCTATCAGAGCTACCAGTATTAAGCCAAGGCTCAGATGAGCCTTTGGTACTAAAAAACAAGTCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCTTAAACTTCAAGGGTCGTGTGACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGATATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1284 0.4245 MSLKSIVRELKEIRDGIGSISRRGGESRHWLSRTKSHVAPDVLVTPFEPIQQGQWANLPPELLSDIIRRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSSYLLYFGLVPFKKLVLFCFDFYCTAENEGNKLLLAAKKMRRATGTNFVISLAADDFSRASNKYVGKLRSNFLGTKFTIHDSQPPHDAAIQPNCRSSRRFNSKQMSQRIPACNYLVGTVSYELNVLCTRGPRKMHCIMNSIPVSAIQGGNIPASTSSPQIFDKPCSPSPALKGKAPTTDLNSASLSELPVLSQGSDEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02639 427 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Seca11g02639 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Seca11g02639 427 Gene3D - 48 101 - -
Seca11g02639 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Seca11g02639 427 PANTHER TUBBY-RELATED 50 425 - -
Seca11g02639 427 CDD F-box_AtTLP-like 55 99 - -
Seca11g02639 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Seca11g02639 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Seca11g02639 427 Pfam Tub family 116 422 IPR000007 -
Seca11g02639 427 SUPERFAMILY Tubby C-terminal domain-like 104 427 IPR025659 -
Seca11g02639 427 Pfam F-box domain 55 102 IPR001810 GO:0005515
Seca11g02639 427 Gene3D Tubby Protein; Chain A 113 427 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02639 Seca-Chr11 47051299 47055034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02639 1 427 TUB Transcription Factor Family AT2G18280 62.238 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca11g02639 Tub 9.2e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02639 K19600 - gmx:100805380 707.597