Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02638 ATGGGAACTGATGGCTGTGAAGTTGTTGGGGCATTACCAAACTCCTTTAAGGTACACCGTAGAATGTGCACAGAACTCAAGAAATTAGTTGATAGGATCTTAAGGATATTACCGCATATAGAGGCAGCTCGCCCATCTTCATCAGGAATGCAGTCTCTATGTTTGCTAAACAGAGGAATTGATAAAGCCAAACAACTTCTGCAACATTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACAGGAGAGTCAGTACTGTCAAAATGCCAAAAGGCAAAAAAATCATTAGAGAAAAGCTTAGTCCAGATTCAGGATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATTATCTTGGGTGTGCGACATTTGTCCTGGACTCTACCGAAGGAGAGGCTGGGAGGGTTATGAGAGAATTGCTCCAGCAAGGTCCTCCAACCTCAGATAATGATTCAACAGAAAACTTTGACAGTAAATCTCTTCAATTTGCAGCACTAAGACTTAATATTACATCCCCAACTACCATCTTAATAGAGAAACGATCTATTAAGAAGATGCTAGCAAATGTTGGACCAGATGAGCAAACAAAAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGATAAAGTATGGACACTTAATCACGGGAGAACAAATGGAAGTCTATTCTCGTAATGAAGGACCAGTGGAAATTGAGAACCCTGGTTTTGATTCTCAATGCATCCATCATGTTATGTCAGACCCATACATGAACCATGATCAGTATAGAACTCAGGCCAGTGAGTTGGGTAGAGTTACACCCCCAGAGGAATATACATGCCCGATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGTAACGTATGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTAATACTATATGCCCAAAATCTAAAAAGAAACTGGCTCATATGGCATTGACTCCTAATGTTGCCCTGAAGGACTTAATATTAAAGTGGTGTGAATCTAATGGAGTCTCCATTTCTGACCCAAGTAGGCAAGCAAAAGATTTTCACTCATGGGAAGCTTCCTCCACTTCCATTATGAGTTTTGGAAGTTCTATGAATGATTTGAACTTGCCAATGGATTTTAGCAACCTCTCACTTGGATCCCTAGATATTAGTAACGGATCAGGTTTCTCACATGGTAAGGCGAATCATGGCTTAAATTCGATGTTATTCAAGACTAGTGACAATTCTCACAGGCATCAATCTCGTAAAGAAACACATGATGCAAATCTGATGAACTTGTCTAAACTCCATGATCGTCAATGGAATTCTCAATGCCAAGTCATTCAAGATATGAAAATAGATTTAAAATACAATTTCCAAGCTCTTTGCTCTGTGTCATCTGAGAATTTCATTGACCCACTCATGATATTTCTGAGCACTGCATATGATAGGCATGATGTAAAAGCTTTGAGAGGTGGAACTCAGTTGCTGTTGGAATTTATGAAATACTGCAGAAATGGCCTGACAAATTTTAGTGAAGATACATGCAGTATGTTGGCAAGTCTTCTCGAGTCAGAAGTGATTGGAGAAGCTCTTGCCATAATGGAAGAACTTTCTGGATATTGGTCTGATAAAGCTAACATTGCAGCTTCTACTGCACTCACTTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAAGCTATTAGAATAATGTGTAATTTTTCATCCAATGGTGAAATTTGTGCTTGCATGGTATCTCTTGGGTGCATCCCAAATTTGCTGTCATTTTTTGAAGACAAAGCCCTTTTGAGAGACTGTATATGTATCTTGAAAAACCTTTGTGATACCGAAGAGGGTAGGGTGTCTGTTGCTGAAACTAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACTTGCACTGTCTATTGTCCTCTCTTTATGCTCTCAGCGCTTGGACTACTGTCAGATGGTTATGTATGAGGGTATTATCCCTTCTCTTGTCAATATCTCCAATAAAGGAAGTGATAGTGCAAAGGCATATGCATTTGAACTGCTCCGTCTTTTGAGAGATGTTAACAATGTTGAGAATGAAGATTGCTTTGAGCCAAATCTCAACAACTCTAGTGATTCTAACAATCACTTTCAAGAAAAGAAATCATCAAAGAAATTGATATTTCTTAAGAAACTATCACCATTCTCAAAAAACAAGAGATGA 2259 0.3869 MGTDGCEVVGALPNSFKVHRRMCTELKKLVDRILRILPHIEAARPSSSGMQSLCLLNRGIDKAKQLLQHCSESSKLYLAMTGESVLSKCQKAKKSLEKSLVQIQDMVPVMLAAEISRIIDYLGCATFVLDSTEGEAGRVMRELLQQGPPTSDNDSTENFDSKSLQFAALRLNITSPTTILIEKRSIKKMLANVGPDEQTKKMILKNLLYLLIKYGHLITGEQMEVYSRNEGPVEIENPGFDSQCIHHVMSDPYMNHDQYRTQASELGRVTPPEEYTCPISLRLMYDPVVIASGVTYERMWIQKWFDEGNTICPKSKKKLAHMALTPNVALKDLILKWCESNGVSISDPSRQAKDFHSWEASSTSIMSFGSSMNDLNLPMDFSNLSLGSLDISNGSGFSHGKANHGLNSMLFKTSDNSHRHQSRKETHDANLMNLSKLHDRQWNSQCQVIQDMKIDLKYNFQALCSVSSENFIDPLMIFLSTAYDRHDVKALRGGTQLLLEFMKYCRNGLTNFSEDTCSMLASLLESEVIGEALAIMEELSGYWSDKANIAASTALTSVSKILDSGNKEFQRKAIRIMCNFSSNGEICACMVSLGCIPNLLSFFEDKALLRDCICILKNLCDTEEGRVSVAETKGCISSVVEILGTGSDEEKELALSIVLSLCSQRLDYCQMVMYEGIIPSLVNISNKGSDSAKAYAFELLRLLRDVNNVENEDCFEPNLNNSSDSNNHFQEKKSSKKLIFLKKLSPFSKNKR. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02638 752 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Seca11g02638 752 Pfam Kinesin-associated protein (KAP) 534 666 - -
Seca11g02638 752 Gene3D - 460 723 IPR011989 -
Seca11g02638 752 SUPERFAMILY ARM repeat 438 704 IPR016024 -
Seca11g02638 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Seca11g02638 752 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Seca11g02638 752 PANTHER U BOX DOMAIN-CONTAINING 20 707 - -
Seca11g02638 752 CDD RING-Ubox_PUB 272 321 IPR045210 -
Seca11g02638 752 SUPERFAMILY RING/U-box 261 346 - -
Seca11g02638 752 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Seca11g02638 752 FunFam RING-type E3 ubiquitin transferase 270 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02638 Seca-Chr11 47046037 47049760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02638 12 713 U-box Gene Family AT4G36550 34.225 8.31e-111 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02638 - - gmx:100798951 1049.65