Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02634 ATGGCATCATCTTGGACTCCAAGGCAGAACAAATTGTTTGAACAAGCCCTGGCTTTATATGATAGAGAAACCCCTGACAGATGGCAGAATGTTGCCAAAGTGGTGGGAAGATCAGTTGAGGAAGTTAAAAGACACTATGAGATCCTCAAAGAAGATGTCGAGCGAATTGAACATGGTCAAATCCCATTCCCTCGTTACAGAACAAACACCAACAACACCTAG 222 0.4324 MASSWTPRQNKLFEQALALYDRETPDRWQNVAKVVGRSVEEVKRHYEILKEDVERIEHGQIPFPRYRTNTNNT. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02634 73 SMART sant 1 52 IPR001005 -
Seca11g02634 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Seca11g02634 73 CDD SANT 4 50 IPR001005 -
Seca11g02634 73 FunFam Transcription factor SRM1 1 63 - -
Seca11g02634 73 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Seca11g02634 73 Coils Coil 39 59 - -
Seca11g02634 73 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Seca11g02634 73 Gene3D - 2 63 - -
Seca11g02634 73 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02634 Seca-Chr11 46814377 46816066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g02634 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02634 - - lja:Lj4g3v0973380.1 142.895