Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02629 ATGCCTACCACTTTGGTTTATAATAATCATCTCCCCAACAGGGATAATTCCTCTTCTTCAACTTTAGGCCAAAAAATTGATCAACCTGATGCTCAAACTCACACAATAGTTTTCACTGATCCACCTTCACATCATCTTTATCCTTCACCAAACCAAGTTCAATTTCAACAACCAAACAGACCCAGAAGAGATCCAGATCTAATTACTTCTTCTCCTATTGCTGCCACAACAATTATAACAAGCACCCCAATTGTTAACCTTCCAAGAACAGCAATAGGGGCTACAATATCTACTACTACTGCCCCTTTGATTAGATACAGAGAGTGTTTGAAAAATCATGCAGCTAGCATAGGGGGTCATGTTGTAGATGGATGTGGTGAGTTCATGCCAAATGGAGAAGAAGGCACCCCTGAATCATTGATCTGTGCTGCTTGTACCTGCCACCGTAATTTCCACAGAAAAGAAGTTAAAGGTGAACCACAACAAGTTTTCAACTATCACAGCTATTATTCCAACAAAAGCAATGGTCAGAATAGGATTCATTCTCATTCTCATCTTCAGCTTAATACTCCCCACTCTTCTCTGCACCAACATCATAGACTTTCTTCACATGGGGTCACCACCACCACCCCTTCAGCAGGGTTGATTCAACCAATGATGATGGCTTTTGGAGGAAGTGGAGGAGGTCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCAAATGATGGATGCCAATTATCAGTGCAGCCACCACTATCAAAGAAGAGGTTCAGGACAAAGTTCACACAGGAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAATTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAATTACAGCAATTTTGTTCTCATATTGGTCTCAAAAAAAAGGTTTTCAAGGTTTGGATGCACAATAGCAAGCAAGCCATGAAGAAGAAACAAATGTAA 966 0.4089 MPTTLVYNNHLPNRDNSSSSTLGQKIDQPDAQTHTIVFTDPPSHHLYPSPNQVQFQQPNRPRRDPDLITSSPIAATTIITSTPIVNLPRTAIGATISTTTAPLIRYRECLKNHAASIGGHVVDGCGEFMPNGEEGTPESLICAACTCHRNFHRKEVKGEPQQVFNYHSYYSNKSNGQNRIHSHSHLQLNTPHSSLHQHHRLSSHGVTTTTPSAGLIQPMMMAFGGSGGGPAESSSEDLNMFQSNDGCQLSVQPPLSKKRFRTKFTQEQKDKMMEFAEKLGWKIQKQDEQELQQFCSHIGLKKKVFKVWMHNSKQAMKKKQM. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02629 321 Gene3D - 245 318 - -
Seca11g02629 321 ProSiteProfiles 'Homeobox' domain profile. 255 319 IPR001356 GO:0003677
Seca11g02629 321 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g02629 321 SUPERFAMILY Homeodomain-like 247 318 IPR009057 -
Seca11g02629 321 FunFam Zinc-finger homeodomain protein 2 247 318 - -
Seca11g02629 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 106 155 IPR006456 -
Seca11g02629 321 MobiDBLite consensus disorder prediction 49 68 - -
Seca11g02629 321 Pfam ZF-HD protein dimerisation region 104 156 IPR006456 -
Seca11g02629 321 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 105 156 IPR006456 -
Seca11g02629 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 314 - -
Seca11g02629 321 NCBIfam homeobox domain, ZF-HD class 257 314 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02629 Seca-Chr11 46640178 46641143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02629 84 321 ZF-HD Transcription Factor Family AT2G18350 49.383 4.52e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca11g02629 ZF-HD_dimer 8.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02629 - - ccaj:109810490 370.548