Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02616 ATGCATCGTTGTTGCAGTAATAGCTCTCAGGGGCACGTGATGGGAACGTGCACATGCGGCATGTTTCACAGCCAAACTAATTCCTACTCTATGCTCTTTTCCATGCCCAATAACAAACCATACGATGATTATGAATTCGAAATGTACCACTCTTCCTCTTCTTCCGTTGACTGCACGCTCTCCCTTGGAACCCCTTCCACGCGTTTAACTAAAGACGAAGAGAAACGTAACCGCCACGAACGTCGCTCTTCCGTTACAAATTTTTGTTGGGATTTATCGCAATCAAAACAGTATAACAACTCGCAATCTCACACCAAACCCAACAGATCAGGAAGCAATGGTAACTCCAACAATGATCCTCTCCTTGCTCGCCGTTGCGCTAACTGTGACACCACTTCCACACCCCTCTGGAGGAATGGGCCTCGTGGCCCAAAGTCGCTATGCAATGCTTGTGGGATAAGATATAAGAAGGAAGAGAGAAGAGCGAATGCTGCCGCTGCCACGTCAGCGGCGGCTTCCGGCGGCGTGATGGAGTCGGCGCGTGTTTACGGCCAACAGAATAATTCGTGGTACGCGCACTCGCAGGGCGTTGGCAATGAGTTACGGTTTGTGGATGATTCGGATAGGGACTCGGAGAATGGAATACCATTTCTCTCTTGGAGGCTCAACGTTGCAGATAGAACGAGCCTTGTTCACGACTTCACAAGATGA 711 0.4951 MHRCCSNSSQGHVMGTCTCGMFHSQTNSYSMLFSMPNNKPYDDYEFEMYHSSSSSVDCTLSLGTPSTRLTKDEEKRNRHERRSSVTNFCWDLSQSKQYNNSQSHTKPNRSGSNGNSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAAATSAAASGGVMESARVYGQQNNSWYAHSQGVGNELRFVDDSDRDSENGIPFLSWRLNVADRTSLVHDFTR. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02616 236 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Seca11g02616 236 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Seca11g02616 236 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Seca11g02616 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 165 - -
Seca11g02616 236 PANTHER GATA TRANSCRIPTION FACTOR 18 12 236 IPR044272 GO:0003700|GO:0009908
Seca11g02616 236 SMART GATA_3 120 174 IPR000679 GO:0006355|GO:0043565
Seca11g02616 236 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Seca11g02616 236 MobiDBLite consensus disorder prediction 97 119 - -
Seca11g02616 236 Gene3D - 122 178 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02616 Seca-Chr11 45491282 45492762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02616 18 236 C2C2-Gata Transcription Factor Family AT3G50870 46.290 1.74e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca11g02616 GATA 6.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02616 - - gmx:100790571 320.472