Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02586 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCATCTCTTCCTCTGGTGGAGCTAATCAAACAGCACCACCTCCAAAGCCCACCGCCAAAAAAAAGCGAAACCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTTTGGCGACGAACCGGTTCGTGTGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGAAGAGGTCACAACTTGCCTTGGAAGCTGAGGCAGAGGACGAGCAAGGAAGTGAGGAAGAGGGTCTACGTGTGTCCTGAACCAACGTGCGTTCACCACGACCCTTCTAGAGCCTTGGGAGATCTCACGGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAAAAATACGCCGTTCAATCCGATTGGAAGGCTCACTCTAAGGTTTGCGGCACCAGAGAGTACAAATGTGACTGTGGAACTGTGTTTTCAAGGAGGGATAGCTTCATCACACATAGAGCTTTTTGTGATGCATTGGCTGAGGAGAGTGCAAGATCTCAGACTCAGAATGTTGTGAAGGCTAATTCAGAGTCTGATTCGAAGGTCTTAACGGGTGATTCATCGCCGCCGCCAGCTACCACCACCACCACCACAACCACCACTACTCAGTCAAATAGTGTCATGTCCTCTGCTTTGCAGACTCAGAACCTAGAGTTGCCTGAAAATCCCCCACAAATCATAGAGGAGCCACAAGCTGTTACTACTGCTTTAAATGGGAGCTGTAGCACCAGCACCACCAGCACAAGCTCAACAAGCAATGGTGGCCCTGCTACTACTACTAGCAATAGTATGTTTGCAAGCTTGTTTGCTTCCTCAACAGCATCAGGGAGCCTTCAATCTCAACCACCAGCATTCACTGACCTAATTAGGGCCATGGGATGTCCAGATCGCCCTGCAGATCTCTCAGCTTCTTCATCAACTGAGGCCATATCACTATGCCTCTCAACCAATCCCCGGGCATCATTCTTTGGGACAGGAGGGCAGGAGTGCCGCCAGTATGCGCCATCACCGCAGCCGGCAGCTATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCTGCCACAAATGACTCTTTGCTTCGTGGGTTAGGCATTGTGTCATCTTCAGCTTCCACTTCATCAGGCCAGCAAGATAGCCTGCAATGGGGTCAAAGGCAAGTGGAACATGATCACAATGCATCAGTTCCTGCAGGGCTTGGATTAGGGCTTCCTTGTGATAGTGGTTCTGGTCTAAAGGAATTGATGATGGGGACTCCCTCAGTGTTTGGTCCCAAGCAAACCACACTTGATTTTCTAGGATTGGGAATGGCTGTTGGTGGCAGTGCTGGTGGAGGCTTATCTGCACTCATCACATCAATTGGTGGTGGTTTGGATGTTACTGCAGCAGCTGCATCTTTTGGTAATGGAGAGTTCTCTGACAAAGATATTGGAAGGAGCTCTTGA 1551 0.499 MPVDLDNVSTASGEASISSSGGANQTAPPPKPTAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSQTQNVVKANSESDSKVLTGDSSPPPATTTTTTTTTTQSNSVMSSALQTQNLELPENPPQIIEEPQAVTTALNGSCSTSTTSTSSTSNGGPATTTSNSMFASLFASSTASGSLQSQPPAFTDLIRAMGCPDRPADLSASSSTEAISLCLSTNPRASFFGTGGQECRQYAPSPQPAAMSATALLQKAAQMGAAATNDSLLRGLGIVSSSASTSSGQQDSLQWGQRQVEHDHNASVPAGLGLGLPCDSGSGLKELMMGTPSVFGPKQTTLDFLGLGMAVGGSAGGGLSALITSIGGGLDVTAAAASFGNGEFSDKDIGRSS. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02586 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 477 IPR031140 -
Seca11g02586 516 FunFam protein indeterminate-domain 12-like 43 111 - -
Seca11g02586 516 MobiDBLite consensus disorder prediction 1 47 - -
Seca11g02586 516 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Seca11g02586 516 Gene3D Classic Zinc Finger 118 199 - -
Seca11g02586 516 Gene3D Classic Zinc Finger 44 110 - -
Seca11g02586 516 SMART c2h2final6 64 86 IPR013087 -
Seca11g02586 516 SMART c2h2final6 105 135 IPR013087 -
Seca11g02586 516 SMART c2h2final6 140 160 IPR013087 -
Seca11g02586 516 MobiDBLite consensus disorder prediction 9 27 - -
Seca11g02586 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Seca11g02586 516 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Seca11g02586 516 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Seca11g02586 516 MobiDBLite consensus disorder prediction 267 290 - -
Seca11g02586 516 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Seca11g02586 516 MobiDBLite consensus disorder prediction 198 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02586 Seca-Chr11 44006007 44009093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02586 1 516 IDZ Gene Family AT5G66730 58.716 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g02586 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02586 K25869 - gmx:100806404 749.584