Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02581 ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGTCGGATCTAAATGTTGGTTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCTTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCCCAATCATTTATTAAAAAAAATAAATAAGCTTAATACAAAAGCAGAAAAAGAAATAATAATAACTTGGTCCAGAACATCTACCATTATACCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAGCACCTACCTATTTATATAATAGATCGTATGGTAGGCCATAAATTGGGAGAATTTGCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGATCTCATCGTTAA 663 0.4012 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGKVGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYLALGRRSRKRNKYSDNLILRRPNHLLKKINKLNTKAEKEIIITWSRTSTIIPTMIGHTIAIHNGKEHLPIYIIDRMVGHKLGEFAPTLNFRGHAKNDNRSHR. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02581 220 FunFam 50S ribosomal protein L2 1 61 - -
Seca11g02581 220 Gene3D - 1 62 IPR014722 -
Seca11g02581 220 PRINTS Ribosomal protein S19 family signature 181 193 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 PRINTS Ribosomal protein S19 family signature 161 180 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 PRINTS Ribosomal protein S19 family signature 193 208 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 NCBIfam 30S ribosomal protein S19 141 219 IPR005732 GO:0003735|GO:0006412|GO:0015935
Seca11g02581 220 Gene3D Ribosomal protein L2, domain 3 63 140 IPR014726 -
Seca11g02581 220 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 Hamap 30S ribosomal protein S19 [rpsS]. 122 217 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 FunFam 50S ribosomal protein L2 62 142 - -
Seca11g02581 220 SUPERFAMILY Ribosomal protein S19 139 212 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 PANTHER RIBOSOMAL PROTEIN L2 1 141 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 Pfam Ribosomal Proteins L2, C-terminal domain 1 117 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 NCBIfam 50S ribosomal protein L2 1 140 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca11g02581 220 ProSitePatterns Ribosomal protein S19 signature. 181 205 IPR020934 GO:0003723
Seca11g02581 220 Pfam Ribosomal protein S19 139 211 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g02581 220 SUPERFAMILY Translation proteins SH3-like domain 1 139 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02581 Seca-Chr11 43906945 43907719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02581 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.643 5.80e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02581 K02886 - fve:10251562 270.396