Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02576 ATGCCGGTTGATTCGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCATCTCTTCCTCTGGTGGAGCTAATCAAACAGCACCACCTCCAAAGCCCACCGCCAAAAAAAAGCGAAACCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTTTGGCGACGAACCGGTTCGTGTGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGAAGAGGTCACAACTTGCCTTGGAAGCTGAGGCAGAGGACGAGCAAGGAAGTGAGGAAGAGGGTCTACGTGTGTCCTGAACCAACGTGCGTTCACCATGACCCTTCTAGAGCCTTGGGTGATCTCACGGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCTACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCTCACTCTAAGGTTTGCGGCACCAGAGAGTACAAATGTGACTGTGGAACTGTGTTTTCAAGGAGGGATAGCTTCATCACGCATAGAGCTTTTTGTGATGCGTTGGCTGATGAGAGTGCAAGATCTCAGACTCAGAATGTTGTGAAGGCTAATTCAGAGTCTGATTCCAAGGTTTTGACGGGTGATTCATCGCCGCCACCAGCTACCACCACCACCACTACCACTCAGTCAAATAGTGTTATGTCCTCTGCTTTGCAGACTCAGAACCTAGAGTTGCCTGAAGATCCCCCACAAATCATAGAGGAACCAAAAGCTGTCACTACTGCTTTAAATGGGAGCAGTAGCACCTGCACCACCAGCACAAGCTCAACAAGCAATGGTGGTGGTGCTGCTACTACTAGCAATAGTGTGTTTGCAAGCTTGTTTGCTTCCTCAACAGCATCAGGGAGCGTGCAATCTCAACCATCAGCATTCACTGACCTAATTAGGGCCATGGGATGTCCAGATCTCCCTGCAGATCTCTCAGCTTCTTCATCATCTGAGGCCATATCTCTATGCCTCTCAACCAATCCCAGGGCATCAATCTTTGGAACAGGAGGGCAGGAGTGCCGCCAGTATGCGCCATCACCGCAGCCGGCAGCTATGTCTGCCACTGCATTATTGCAGAAAGCTGCTCAAATGGGTGCTGCTGCGACAAATACCTCTTTGTTTCGTGGGTTAGGCATTGTGTCATCTTCAGCTTCCACTTCATCAGGCCAGCAAGATAGCCTGCAATGGGGTCAAAGGCAAGTGGAACATGATCACAATGCATCATTTCCTGCAGGGCTTGGACTAGGTCTTCCTTGTGATGGTGCTTCTGGTCTAAAGGAATTGGTGATGGGGACTCCCCCAGTGTTTGGTCCTAAGCAAACCACACTTGATTTTCTAGGATTGGGAATGGCTGTTGGTGGCAGTGCTGGTGGAGGCTTATCTGCACTCATCACTTCAATCGGTGGTGGTTTGGATGTTACTGCAGCAACTGCGTCTTTTGGTAATGGAGAGTTCTCTGGCAAAGATATTGGAAGGAGCTCTTGA 1542 0.4961 MPVDSDNVSTASGEASISSSGGANQTAPPPKPTAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCYKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALADESARSQTQNVVKANSESDSKVLTGDSSPPPATTTTTTTQSNSVMSSALQTQNLELPEDPPQIIEEPKAVTTALNGSSSTCTTSTSSTSNGGGAATTSNSVFASLFASSTASGSVQSQPSAFTDLIRAMGCPDLPADLSASSSSEAISLCLSTNPRASIFGTGGQECRQYAPSPQPAAMSATALLQKAAQMGAAATNTSLFRGLGIVSSSASTSSGQQDSLQWGQRQVEHDHNASFPAGLGLGLPCDGASGLKELVMGTPPVFGPKQTTLDFLGLGMAVGGSAGGGLSALITSIGGGLDVTAATASFGNGEFSGKDIGRSS. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02576 513 MobiDBLite consensus disorder prediction 1 47 - -
Seca11g02576 513 FunFam protein indeterminate-domain 12-like 43 111 - -
Seca11g02576 513 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Seca11g02576 513 MobiDBLite consensus disorder prediction 1 27 - -
Seca11g02576 513 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Seca11g02576 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 473 IPR031140 -
Seca11g02576 513 Gene3D Classic Zinc Finger 118 198 - -
Seca11g02576 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Seca11g02576 513 Gene3D Classic Zinc Finger 44 110 - -
Seca11g02576 513 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Seca11g02576 513 MobiDBLite consensus disorder prediction 198 238 - -
Seca11g02576 513 SMART c2h2final6 64 86 IPR013087 -
Seca11g02576 513 SMART c2h2final6 105 135 IPR013087 -
Seca11g02576 513 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02576 Seca-Chr11 43800439 43803321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02576 1 513 IDZ Gene Family AT5G66730 57.875 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g02576 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02576 K25869 - gmx:100806404 713.761