Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02570 ATGGAGCACAATGAATGTCAGGCATTTGAAATTGATGAGCCTAAAGATATTTTTTTGGGTCAAGTTGTGTATAGCAAAGATGAAGCTTATAACTTATACCAAGAACATGCATTCAAAATGGGTTTTAGTGTAAGAAAAGGGAGGGCGTTGTACTATGATAGTGAGAAAAAGAATATACGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGCAGATTCAAGAACAAATTGCCAAGCTATGGTGAGATTTAATGTGAGTAAGGAAGGATTATGGAAAATTACAAAGCTGGAATTAAATCACAACCATGACTTTGTGCCACCTGAGCAAAGGCATTTGTTACGTTCTATGAGAAATATGTCAAATGTCAAAGGAGACCTCATAAAATCCATGGTGAATGCCGGTATGAGAGTTACTAATATTTGGAGTTATTTAGGAGAAGAGGTTGGTGGATGTGATAACCTCGGTATAACAATGAAAGATATGCATAATTATGTTTACTCTGAAAAGATGAAATTAATTGATGCTGGTGATGCCCAGGCTTTAGTGAACCACTTACAAAGTAGACAAGCACAGGATGCAATGTTCTACTATAGTGTTCAGTTAGACCAGGAATCACGTTTGGCTAATGTATTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGGTTTTTGACACCACTTACCGTACTAACAAATATAACTTGATTTGTGCCCCATTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCCTTACTATCTAATGAAACTTCAGCTTCTTTTTCTTGGTTGTTCAAAGTGTTTTTGGAAAGCATGGAAAACAAACAACCAAAAACAATTTTTACAGATCAAGATGCTGCTATGGCTAAAGCAATTGGAGAGGTAATGTTAAATACACGCCATCGATTATGCTTATGGCATATAGCTAAAAATGCTCCTTCTCATTTGGGTTCTCTCAATTCTGATTATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGACTCAGAAGAAGAATTTCAAAGCACTTGGGATGAGATGATAAACGAGTACAAACTTCATGGTCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAGGATATATTCTCTGCTGGTATCAAGTACTCTCAAAGGAGTGGAAGTACAAATAGTGTTTTGAATGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCATTTTGGCATTTGAGAAGATGGTAAAAAAGTGGCGGCATTTAGAGGTTGAGAAGGAATTCAAAAATAAGCAAAGTGAGCCTCCTCGCATTATAAATATTAGTGAAACTCTGCGACAAGCATCTATGATATATACTCACAAGATCTTTAAATTGTTCTTGAATGAATATCTTGATGGCACGGGTGGAAGCACTTCTATGAAGATTGGTGGGTGTGATAATGTGTCATATCATGAAGTAATTTTGAACAACGTGCCTAATAAGAAATATATGGTAACATTTGACTCTTCCACTATTATGATTAATTGTAGCTGCCGCAAATTTGATTCCATGGGTATTCTTTGTAGTCATTCTTTGAGAATTTACAACATTAAAGGTATTCTAAAAATACCTGATCAATACTTCTTAAAAAGATGGTCAAAAGAGGCAAGGTCCATGATTTATGAGCATACAAAAGAAGATTCTAGCTCCAGTAACATTAATTCAATGATCAATGGTGATGATGCTGGTTTTGTTTATCGAAATGCTATTATGAAGTCATTTTATAATCTTGTTTTAGAAACTCAAGAACATAAAGAAGCTCAACAAATTATGTGGAAATTGCTTGATATTGGAGTTGAGCGTGTGCGACAATGTGTCGGTAAGCTCAATTTAAATTCAAATTCAGAAACCATTGATATTGAGGACAATGAGTGTGCTGCAATTTTTAATCCCCCTCTTGCAAAGACTAAAGGGATATCTAGTGCTCGGAAGAAGGGGCATTTTGAGAAAAGGAAACGATCAACCACAAAAGCAAAGAAAGGTAGGGATTGGACAGCTTTTTAG 2094 0.3539 MEHNECQAFEIDEPKDIFLGQVVYSKDEAYNLYQEHAFKMGFSVRKGRALYYDSEKKNIRFKNNEPQGEVTYERADSRTNCQAMVRFNVSKEGLWKITKLELNHNHDFVPPEQRHLLRSMRNMSNVKGDLIKSMVNAGMRVTNIWSYLGEEVGGCDNLGITMKDMHNYVYSEKMKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLANVFWRDGKSKVDYDCFGDVVVFDTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLSNETSASFSWLFKVFLESMENKQPKTIFTDQDAAMAKAIGEVMLNTRHRLCLWHIAKNAPSHLGSLNSDYKFQSLFNKCMKGCDSEEEFQSTWDEMINEYKLHGHQWLSNMYKIRHKWSTAFSKDIFSAGIKYSQRSGSTNSVLNEIAGKTTSLTQFILAFEKMVKKWRHLEVEKEFKNKQSEPPRIINISETLRQASMIYTHKIFKLFLNEYLDGTGGSTSMKIGGCDNVSYHEVILNNVPNKKYMVTFDSSTIMINCSCRKFDSMGILCSHSLRIYNIKGILKIPDQYFLKRWSKEARSMIYEHTKEDSSSSNINSMINGDDAGFVYRNAIMKSFYNLVLETQEHKEAQQIMWKLLDIGVERVRQCVGKLNLNSNSETIDIEDNECAAIFNPPLAKTKGISSARKKGHFEKRKRSTTKAKKGRDWTAF. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02570 697 MobiDBLite consensus disorder prediction 670 697 - -
Seca11g02570 697 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 633 IPR031052 GO:0006355
Seca11g02570 697 SMART 26again6 524 551 IPR006564 GO:0008270
Seca11g02570 697 MobiDBLite consensus disorder prediction 670 688 - -
Seca11g02570 697 Pfam MULE transposase domain 231 325 IPR018289 -
Seca11g02570 697 Pfam FAR1 DNA-binding domain 32 109 IPR004330 -
Seca11g02570 697 ProSiteProfiles Zinc finger SWIM-type profile. 513 549 IPR007527 GO:0008270
Seca11g02570 697 Pfam SWIM zinc finger 519 543 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02570 Seca-Chr11 43724345 43726468 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02570 MULE 2.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02570 - - tpra:123905334 1075.85