Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02569 ATGAGAGTTCCCGTTCCCTCATCTCCACAGGCCAACCCAAAACTCATCACCCCAAACACTGTCCTCCACAACCCTCCCAACAACAATAACAATCCAACCTTGTGCTACGAACCCACCTCCGTGCTCGATCTCTGCCGTAGCCCCAGCCCTGAAAAGAAAACCACCGTTGTCCCCAAGCCAGAACCTGAAGATCAACAAATAGAGCTGGATGATCATGTGTTGCCTAATTTGGACTGGTGGGATTCCATTATGAAGGACTTGGGCTTACAAGACGACTCTACCACTCCCCTTTTGAAAACTAACACTGACAATCTCAATTCTAACCCATGCATCCCTGAAATTTACCCAAACCCTTCTCAAGACCCACCCTTTGATCACCCTCCAGACTTCACCACTCTCTCTGATATTTACTCCAATCAAAACCTGGCCTACAACTACACCAACAATTTGGACCATTTGGTTCATGACTTCAATCCCTCCCACCACAACAACAATAACAACAACAGCAATTGGGATTTCATAGAAGAGCTTATCCGTGCGGCTGATTGCTTTGACAGCAACCACCTTCAACTTGCTCAAGCGATATTGGAGCGGCTCAATCAACGGCTACGATCACCTTTGGGGAAACCGCTCCATAGAGCAGCTTTTCACTTCAAAGACGCTCTCCAGTCTCTCCTCTCCGGTTCGAACCGGACCAACGCGCCGCGACTTTCTTCCATGGTGGAGATCGTGCAAACCATTAGAACCTTCAAGGCCTTTTCGGGAATTTCACCGATTCCAATGTTCTCCATCTTCACCACCAACCAAGCTCTCCTTGAAGCTCTCCATGGCTCCTCCTTTATGCATGTTGTTGACTTCGAAATCGGACTCGGAATCCAATACGCTTCTCTCATGAAAGAGATCGCCGAGAAGGCGGGAAATAATAACTCATCACCGCTCCTCCGCATCACTGCCGTCGTGCCGGAAGAGTACGCCGTCGAGAGTCGGCTTATAAGGGAGAATCTCAACCAGTTCGCGCAAGAACTCGGGATCCGTGTGCAGATCGACTTTGTGCCGCTTCGGACCTTCGAGACGGTGTCGTTTAAGGCCGTCAGGTTCGTCGATGGCGAGAGGACAGCCGTATTGTTGTCGCCGGCGATTTTCTGCCGCCTCAGCGCCGGCAGTGGAAGCGGTAGCATCGCAGCGTTTCTGGCGGACGTGCGAAGGATTTCTCCCGGTGTGGTGGTGTTCGTCGACGGCGAGGGATGGACTGAGGCGGCGGCTGCGTCGTCGTTTCGCCGCGGTGTAGTGAATAGCCTGGAGTTCTACTCGATGATGCTGGAGTCGCTGGATGCGTCGGTGGTTTCCGGGGGAGGGGGAGATTGGGCGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTTGCAGCGGTGGAAGCAGCCGGAAGAAGGACGGCGCCGTGGCGGGAGGCGTTTTACGGTGCCGGAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTTTCAGGCGGAGTGCTTGTTGGCGAAGGTGCAAATCAGGGGCTTCCACGTGGCAAAACGACAAGCTGAGTTGGTGCTCTTCTGGCATGAGCGGGCCATGGTTGCCACGTCAGCTTGGCGGTGTTAG 1629 0.5353 MRVPVPSSPQANPKLITPNTVLHNPPNNNNNPTLCYEPTSVLDLCRSPSPEKKTTVVPKPEPEDQQIELDDHVLPNLDWWDSIMKDLGLQDDSTTPLLKTNTDNLNSNPCIPEIYPNPSQDPPFDHPPDFTTLSDIYSNQNLAYNYTNNLDHLVHDFNPSHHNNNNNNSNWDFIEELIRAADCFDSNHLQLAQAILERLNQRLRSPLGKPLHRAAFHFKDALQSLLSGSNRTNAPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSSFMHVVDFEIGLGIQYASLMKEIAEKAGNNNSSPLLRITAVVPEEYAVESRLIRENLNQFAQELGIRVQIDFVPLRTFETVSFKAVRFVDGERTAVLLSPAIFCRLSAGSGSGSIAAFLADVRRISPGVVVFVDGEGWTEAAAASSFRRGVVNSLEFYSMMLESLDASVVSGGGGDWARRIEMLLLRPKIFAAVEAAGRRTAPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02569 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 536 IPR005202 -
Seca11g02569 542 MobiDBLite consensus disorder prediction 10 32 - -
Seca11g02569 542 Pfam GRAS domain family 174 541 IPR005202 -
Seca11g02569 542 ProSiteProfiles GRAS family profile. 164 541 IPR005202 -
Seca11g02569 542 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02569 Seca-Chr11 43720662 43723509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02569 66 541 GRAS Transcription Factor Family AT4G36710 56.762 1.40e-172 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g02569 GRAS 9.8e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02569 - - cam:101510420 825.854