LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02567	ATGGGTACCGGTGAAGAGAACACAACTAAACCTTCTAAATCATCTTCATCAACTCAGGAGATACCAACAGCACCATCATATCCAGATTGGTCAAACTCCATGCAGGCCTATTATGCTCCTGGAGCCACGCCACCTCCCTTTTTTGCCCCAACCGTTGCTTCCCCAACTCCCCATCCCTATTTGTGGGGAGGCCAGCATCCCTTAATGCCACCATATGGGACTCCAGTCCCATACCCAGCTTTATACCCTCCTGGGAATATCTATGCTCATCCTAGCATGGCAGGGACTCCAAGTGCTATTCAGCAAAGTTCAGAGATGGAAGGAAAGGGACTTGATGGAAAAGATCGGGATTCATCCAAAAAAATAAAAGGAACTTCTGCAAATACATATGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCGTTTCACAAAGCGCTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGTGATGAGAATACTAACCAACAGGAATCAGCTTCAAACAAGAAGGGAAGCTTTGACCAAATGCTTGTTGATGGAGCCAATGCACAGAACAATTCTGCCGGTGCCATTTCTCAATCCTCTGTGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCGTCTTCTGCTGGTGCTGAAGCTGCAAAAATGAGACATAATCAATCTGGTGCCCCTGGAGCTGTTGCTATGGGTCGTGAAGTTGTACTTGGTGAACAATGGATACAAGATGAACGTGAGCTGAAAAGACAAAAGAGAAAACAATCTAACAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAGACACTGGGAAATGAGAATCAAACTCTCAAAGAAGAGCTTCAGAAACTTTCCGAAGAATGTGAGAAGCTTACATCTGAAAATAATTCTATCAAGGAAGAGTTGGAACGGTTGTGTGGGCCAGAAGCAGTTGCTAATCTTGGATGA	1011	0.453	MGTGEENTTKPSKSSSSTQEIPTAPSYPDWSNSMQAYYAPGATPPPFFAPTVASPTPHPYLWGGQHPLMPPYGTPVPYPALYPPGNIYAHPSMAGTPSAIQQSSEMEGKGLDGKDRDSSKKIKGTSANTYAKAGESGKAGSGSGNDGVSQSAESGSEGSSNASDENTNQQESASNKKGSFDQMLVDGANAQNNSAGAISQSSVPATNLNIGMDLWNASSAGAEAAKMRHNQSGAPGAVAMGREVVLGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVETLGNENQTLKEELQKLSEECEKLTSENNSIKEELERLCGPEAVANLG.	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02567	336	Coils	Coil	267	322	-	-
	Seca11g02567	336	Pfam	G-box binding protein MFMR	1	93	IPR012900	-
	Seca11g02567	336	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	261	276	IPR004827	GO:0003700\|GO:0006355
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	1	187	-	-
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	70	84	-	-
	Seca11g02567	336	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	256	319	IPR004827	GO:0003700\|GO:0006355
	Seca11g02567	336	FunFam	BZIP transcription factor	256	307	-	-
	Seca11g02567	336	CDD	bZIP_plant_GBF1	259	309	IPR045314	GO:0003700\|GO:0006355
	Seca11g02567	336	Gene3D	-	257	311	-	-
	Seca11g02567	336	Pfam	bZIP transcription factor	254	316	IPR004827	GO:0003700\|GO:0006355
	Seca11g02567	336	SUPERFAMILY	Leucine zipper domain	257	313	IPR046347	GO:0003700\|GO:0006355
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	1	38	-	-
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	257	279	-	-
	Seca11g02567	336	SMART	brlzneu	254	318	IPR004827	GO:0003700\|GO:0006355
	Seca11g02567	336	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	1	332	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	108	122	-	-
	Seca11g02567	336	MobiDBLite	consensus disorder prediction	142	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02567	Seca-Chr11	43708084	43713763	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02567	1	335	bZIP Transcription Factor Family	AT4G36730	54.118	1.43e-108	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Seca11g02567		MFMR	1e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02567	K09060		-	gmx:778191	533.102