Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02563 ATGAATCATGTACCTATCGATGACAATATGATGCTTTTCTCTCAACTATATCCTCCAGGTGCTTTCACTCAAATAACTCCTCAACAAGGGGAGAAAAAGCCACGACGCAAGCGAAGTAAAAAGAACAAATTAGGAGGAGAAAATGGTAGTGCGGGGGTGATGAAGAAGAGAAAGCTAAGTGAAGAGCAAGTTAATCTTCTTGAGCAAAGCTTCATCAATGAACATAAACTTGAGTCTGAAAGGAAAGACAGGCTCGCAATGGAGCTTGGTTTGGATCCTCGACAAGTTGCAGTGTGGTTTCAAAATAGAAGATCTCGTTGGAAGAACAAAAAATTGGAGGAAGAGTACTCCAATCTTAAAAATGTCCATGAAACCACCGTGCTCCAAAAATGCCACCTTGAGACCGAGGTAGTGTTGAAGCTCGAGGAACAACTTTTAGAGGCAAAGAAGGAGATTCAGAGACTTCAAAAACGTGGTGGTAGAACCTCAAGCAACAGCTCTAGTTTCTCACAGTCACAATCAATGGAAGCTGTGAACCCACCATTTCTTGGAGGAGAGTTTAGGATGGAAGAATATGATGATGGTGATGTGTCTTATATTCCGGAAACAGATTATATATTCAATGGGATGGAATGGTTTAATCTGTATATGTGA 654 0.4083 MNHVPIDDNMMLFSQLYPPGAFTQITPQQGEKKPRRKRSKKNKLGGENGSAGVMKKRKLSEEQVNLLEQSFINEHKLESERKDRLAMELGLDPRQVAVWFQNRRSRWKNKKLEEEYSNLKNVHETTVLQKCHLETEVVLKLEEQLLEAKKEIQRLQKRGGRTSSNSSSFSQSQSMEAVNPPFLGGEFRMEEYDDGDVSYIPETDYIFNGMEWFNLYM. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02563 217 MobiDBLite consensus disorder prediction 154 176 - -
Seca11g02563 217 CDD homeodomain 55 111 IPR001356 GO:0003677
Seca11g02563 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 172 IPR045224 GO:0003700
Seca11g02563 217 MobiDBLite consensus disorder prediction 21 54 - -
Seca11g02563 217 SMART HOX_1 53 114 IPR001356 GO:0003677
Seca11g02563 217 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Seca11g02563 217 Coils Coil 102 129 - -
Seca11g02563 217 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Seca11g02563 217 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Seca11g02563 217 Coils Coil 138 158 - -
Seca11g02563 217 Gene3D - 46 119 - -
Seca11g02563 217 MobiDBLite consensus disorder prediction 158 176 - -
Seca11g02563 217 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Seca11g02563 217 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Seca11g02563 217 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Seca11g02563 217 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02563 Seca-Chr11 43530646 43532056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02563 1 217 Homeobox Transcription Factor Family AT2G18550 52.232 1.12e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca11g02563 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02563 K09338 - gmx:100803948 271.552