Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02541 ATGACTTATCAAGTCATCAATACCATCCTTTGGTGCTTTGTGCTAGCTATTGTGATCATCGGCTTTTTCACTTCAAATGTTAGTTCTACCAATAATCATTCCAAGATAGAAAAAAGCTTGGAAATGAATGTGATTGATCAATGTTGGAGGTTAAATCCTGAATGGAGGAGACATCGACAACAACTTGCCCATTGCTCAGTGGGGTATGTAGGGAAGATGACAAACAACATAGGCGAGGACCTCATCCATTATAAAGTTACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACCTTGAGATATGGAGCTTCCATGATTCAAAGTAAAGTTTGGATCACATTCAAAAGGGACATGCACATTAGGCTCATTAGACCCCTTCTCATTAGCAGTTTCACCACCATTGATGGTCGAGGGGTCAATGTCCACATTGCTGACAATGCATGCTTGATGATCTATAAGGCAACAAATATAATCATCCATAACATTAGGATTCATCATTGCCGACCTCAAACTCCTGGAATGGTGATGGGTCCTAAAGGAAAGGTAATGCCTTTGGGTCAAGTAGATGGAGATGCAATTAGATTGGTTACCGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATTGCCAAGATGGTCTTCTTGATGTCACAAGGGGTTCCACTGATGTGACAGTCTCTAACAATTGGTTCAGGCAGCAAAATAAGGTTATGCTTCTTGGACATGATGATGGGTTTGTTAGAGACAAGAACATGAAGGTCACCGTTGTGTACAACTATTTTGGACCTAATTGCCACCAACGGATGCCAAGAATCCGCCATGGGTATGCACATGTTGCCAACAATCTTTATATGGGATGGGTGCAATATGCCATAGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAATCGAACCTCTTCATAGCACCAACTTCGGGGAGTAAAGAGGTGACATGGAGAAAAAATAGTAATGGAATTAGTGACACATGGCAATTTCATTCAGTTGGGGACGCTTTTGAGAATGGGGCTTCCTTCACGGAAACAGAAGGTGGACAAGTACCAAAACCAAATTATAGCCCTCAACAAACTTTTGAGGTTGCGGATGTTAAATCCGTGAGAGCATTGACAAGCTCATCAGGCATGTTACGATGCAGTAAAACCTCTATATGTTGA 1182 0.4179 MTYQVINTILWCFVLAIVIIGFFTSNVSSTNNHSKIEKSLEMNVIDQCWRLNPEWRRHRQQLAHCSVGYVGKMTNNIGEDLIHYKVTDPSDDPINPKPGTLRYGASMIQSKVWITFKRDMHIRLIRPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHNIRIHHCRPQTPGMVMGPKGKVMPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFRQQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIAPTSGSKEVTWRKNSNGISDTWQFHSVGDAFENGASFTETEGGQVPKPNYSPQQTFEVADVKSVRALTSSSGMLRCSKTSIC. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02541 393 Pfam Pectate lyase 130 310 IPR002022 -
Seca11g02541 393 Gene3D - 42 386 IPR012334 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Seca11g02541 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Seca11g02541 393 PANTHER PECTATE LYASE 18-RELATED 31 389 IPR045032 GO:0030570
Seca11g02541 393 SUPERFAMILY Pectin lyase-like 83 360 IPR011050 -
Seca11g02541 393 SMART amb_all 119 316 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02541 Seca-Chr11 42560221 42561994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02541 73 320 Polysaccharide Lyase AT5G09280 71.774 4.95e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02541 K01728 - gmx:100811216 697.967