Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02540 ATGTATCACTTTACAATCACCCTTGTCTTCACTTTGGCCATATTCTTATGTAGCTTCTCTTTGGTTCTGGGACAGCAACCTTACATTGGTAAGGCTACAACAGCATGTTCTCAAACGGGTAACTCAAATTCTATCCGTGGCTACACTTGTGATAGCATAAATCCTAGTTGCCAAGCTTACCTTACCTTCAGGACTCAACCCCTATACAATTCTGTTTCCACAATATCTGCTTTGTTGGGTTCTGACCCATCTCAGCTTTCTGAAGCAAATTCTGTTTCTCAAGATGCAACCTTTGAAACAAACAAGTTGGTGATTGTTCCAGTCAATTGCTCTTGTGCAGGAAATAGTAGCAATAATAATCAGTATTATCAGTTCAACACATCCTATGTGGTCCAAAACAATGACACCTACTTTTTGATTGCTAACAACACTTTTGAAGGCCTCTCAACATGTCATGCTCTTCAGGATCAAAATAGCATCCGTGAACAAGACTTACTCCCTGGTACAAAACTTAGAGTTCCTCTTAGATGTGCTTGTCCCTCAAAGAATCAAACTGAGAAAGGTGTCAAGTACCTTCTAAGTTACCTGGTAGCATCTGGAGAATTTGTTTCCCTCATTAGTGAAAGATTTGGTGTCACCACAGACACAATTCTTGAAGCTAATAGCCTTTCTTTCCAAGATTCCACCATCTATCCAACTACCACACTTCTAGTACCTCTTCAAGAAAAGCCCTCTAGTAGCCAAACCATTGATCCACCTCCACCACCACCACCTCCACCACCATCTCCTCCCCCTTCTTCCTCTAGCTCAAGCAAAACATGGGTGTATGTAGTTGTGGGAGTTGTTGGAGGTGTTGCCTTGATATTGGTTCTCTTTGCAATCATTTTCAGGAAGCACTATCACAAAAGTAACAAAAAGAAAGATGATTCTGTGATTGTGTCAGAGAATTTTGTGGCAATTGAGAAAGGGAAGAAGTTGGATGATGAGTCTGAAAGTTTGTCAGAGATCATATCTGGCATAGCTCAATCATTCAAGGTGTACAGCTTTAAGGAACTACAAAGTGCAACAAATAATTTTAGTCCTAGTTGTAGGATCAAAGGATCAGTTTATAGTGGTGTTATCAATGGTGATTTGGCTGCAATTAAAAAGATGGATGAAGATGTTTCAAAGGAGATAGAGATTTTAAGCAAAGTGAACCATTCTAATGTCATACGCCTTTCTGGGGTTAGCTTTAATGAGGGCTATTGGTATCTTGTTTATGAGTATGCTGCTAATGGAAACTTGAGTGATTGGATCTACTCCAACAGCAAAAACATGAAGTTTCTGAGTTGGACACAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGACTATCTTCATAGTTTCACTTCTCCTCCTCATATCCATAAAGATCTAAAGAGTGGTAACATTCTTTTGGATAGTGATTTCAGGGCAAAGATTGCAAATTTTGGGCTTGCAAGGTCTGTGGAAGGAGAAGGTGAACAATTTCCCATGACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCAGAGTATTTGGAAAATGGTTTAGTGTCTACAAAGCTTGATGTTTATGCATTTGGGGTTCTTATGTTTGAAATGTTCACTGGAAAAGAGGTTGCTGCTATTTATGCAGAAGGTAATGTGAATTTGTTAGATGTTGTAAGTGCCATACTTGATGAGGAAGGTGCACATGAGAGGTTGAGAGATTTCATGGATCCCTCTCTAGAAGGAAATTATCCAATGGAACTTGCTATGTTTGTAGTTGGAATCATAAGCACTTGCATGAAGAAAGATCCTACAAGTCGCCCTGCTATGAACGAGATTGTGTCATCTCTTTCCAAAGCCTTGGATTCGTCCTTGAATTGGGAAGTGTCAGTGAAAATCTCAGGTTGA 1926 0.3998 MYHFTITLVFTLAIFLCSFSLVLGQQPYIGKATTACSQTGNSNSIRGYTCDSINPSCQAYLTFRTQPLYNSVSTISALLGSDPSQLSEANSVSQDATFETNKLVIVPVNCSCAGNSSNNNQYYQFNTSYVVQNNDTYFLIANNTFEGLSTCHALQDQNSIREQDLLPGTKLRVPLRCACPSKNQTEKGVKYLLSYLVASGEFVSLISERFGVTTDTILEANSLSFQDSTIYPTTTLLVPLQEKPSSSQTIDPPPPPPPPPPSPPPSSSSSSKTWVYVVVGVVGGVALILVLFAIIFRKHYHKSNKKKDDSVIVSENFVAIEKGKKLDDESESLSEIISGIAQSFKVYSFKELQSATNNFSPSCRIKGSVYSGVINGDLAAIKKMDEDVSKEIEILSKVNHSNVIRLSGVSFNEGYWYLVYEYAANGNLSDWIYSNSKNMKFLSWTQRIQIALDVATGLDYLHSFTSPPHIHKDLKSGNILLDSDFRAKIANFGLARSVEGEGEQFPMTRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMFEMFTGKEVAAIYAEGNVNLLDVVSAILDEEGAHERLRDFMDPSLEGNYPMELAMFVVGIISTCMKKDPTSRPAMNEIVSSLSKALDSSLNWEVSVKISG. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02540 641 Pfam LysM domain 195 239 IPR018392 -
Seca11g02540 641 Pfam LysM domain 129 174 IPR018392 -
Seca11g02540 641 FunFam PTI1-like tyrosine-protein kinase 3 423 637 - -
Seca11g02540 641 Gene3D LysM domain 124 183 IPR036779 -
Seca11g02540 641 MobiDBLite consensus disorder prediction 248 267 - -
Seca11g02540 641 SUPERFAMILY Formin homology 2 domain (FH2 domain) 253 261 - -
Seca11g02540 641 Gene3D Phosphorylase Kinase; domain 1 329 422 - -
Seca11g02540 641 SMART LysM_2 128 174 IPR018392 -
Seca11g02540 641 SMART LysM_2 194 239 IPR018392 -
Seca11g02540 641 PIRSF TyrPK_CSF1-R 7 149 - -
Seca11g02540 641 PIRSF TyrPK_CSF1-R 433 549 - -
Seca11g02540 641 PIRSF TyrPK_CSF1-R 380 446 - -
Seca11g02540 641 PIRSF TyrPK_CSF1-R 593 639 - -
Seca11g02540 641 Gene3D LysM domain 184 252 IPR036779 -
Seca11g02540 641 MobiDBLite consensus disorder prediction 242 267 - -
Seca11g02540 641 ProSiteProfiles Protein kinase domain profile. 306 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02540 641 ProSiteProfiles LysM domain profile. 193 238 IPR018392 -
Seca11g02540 641 Pfam Protein kinase domain 381 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02540 641 SMART serkin_6 359 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02540 641 Gene3D Transferase(Phosphotransferase) domain 1 423 635 - -
Seca11g02540 641 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 636 - -
Seca11g02540 641 ProSiteProfiles LysM domain profile. 127 173 IPR018392 -
Seca11g02540 641 SUPERFAMILY Protein kinase-like (PK-like) 341 623 IPR011009 -
Seca11g02540 641 SUPERFAMILY LysM domain 193 239 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02540 Seca-Chr11 42416898 42418823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02540 1 636 Receptor kinase-like Gene Family AT2G23770 45.327 3.08e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca11g02540 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02540 - - gmx:100806077 863.603