Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02538 ATGAACAATGAGTATGACAAGCTTATTCCAGGCCAACTCTTGTTGGTACCTGTATCTTGTGGTTGCAGTGGAAACCACTCTTTTGCTAATATCACATACGTGATCAAGCAAGGTGAAAGCTACTACTATCTTTCAACCACTTCCTATGAGAATCTCACCAATTGGCAGACAGTGGAAGATTCAAACCCTCACCTAAATCCATATTTGTTACCAGTAGGCACCAAAGTAGTGATCCCTTTGTTCTGTAGGTGCCCTTCAAACAACCAGTTGGAGAAAGGGATAGAGTATCTTATTACTTATGTGTGGCAGCTAAATGACAATGTTTCCTCTGTAGCTGCAAAGTTTGGTGCATCACAAGGGGACATAAACATAATGACTGAAAACTACTTTGGCCACAACTTCACTGCTGCAATCAATCATCCTGTTTTTATCCCAGTAACACAATTACCAGCTCTTTCTCAATCTTATTCTTCACTTGAAAGAAAGAGGACAAATCATCTTCCTATTATCATTGCCATTGGTATGAGCCTGGGATGCACTTTTTTTATTGCAGTTTCATTACTGGCTTATGTATATTATCTGAGTAAAAGGAAGAGTAGTGAGAATAGGAGTATGGCATCTGTGGAGACAGCAGATAAGTTAATTTCTGGAGTTTCAGGCTATGTAAGTAAGCCAACTGTATATGAAGTTGGTATGATTATGGAAGCTACCATGAACCTCAATGAACAGTGCAGGATTAGGGAATCAGTGTACAAGGCCAAAATGGATGGTCAGGTTTTAGCTGTGAAAAAAGTCAAGGAAGATGTCACAGAGGAGGTGATGATTCTACATAAGGTAAATCATGCAAATCTAGTGAAACTAATAGGTGTCTCTTCAGGATATGATGAAAATAACTTCCTTGTTTATGAGTATGCTGAAAATGGATCTCTTCATGACTGGTTGTTCTCCAAGTCTTCAACGGTTTCAAGCTCAGTGTCAGTGGCTTTCCTCACATGGAGTCAGAGGATAAGCATAGCTATTGATGTTGCCATGGGTCTGCAATACTTGCATGAACACACTCAACCAAGTATAGTCCACAGGGATATCACATCAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTTTCCTTGGCCAGAACTTCAATGAATCCTATGATAAAAAAAGTTGATGTGTTTGCTTATGGAGTGGTTCTGTTGGAGTTACTGACAGGCAAGAAATCCTTCATAAACAACGAAAATGGTGAGGTGACTATGTTGTGGAAAGATATTAGGGGTATCTTTGATGTAGAAGATAAGAGAAAGGAGAGGCTTAGAATATGGATGGATCCTAAGCTTGGGGGATTTTATCCTCTTGATGATGCTCTTAGCTTGGCCTCCTTGGCAGTGAATTGCACAGCAGAGAAGTCTTTGTCCAGACCAACCACGGGAGAAGTTGTTCTTTGCCTCTCCCTTCTCACTCAACACTCTCCTACCACATTAGAGAGATCATGGAATTATGGGATAGATGTAGATGTTACTGAAATGGTTACTCCCATCGTAGCTCGCTGA 1563 0.4018 MNNEYDKLIPGQLLLVPVSCGCSGNHSFANITYVIKQGESYYYLSTTSYENLTNWQTVEDSNPHLNPYLLPVGTKVVIPLFCRCPSNNQLEKGIEYLITYVWQLNDNVSSVAAKFGASQGDINIMTENYFGHNFTAAINHPVFIPVTQLPALSQSYSSLERKRTNHLPIIIAIGMSLGCTFFIAVSLLAYVYYLSKRKSSENRSMASVETADKLISGVSGYVSKPTVYEVGMIMEATMNLNEQCRIRESVYKAKMDGQVLAVKKVKEDVTEEVMILHKVNHANLVKLIGVSSGYDENNFLVYEYAENGSLHDWLFSKSSTVSSSVSVAFLTWSQRISIAIDVAMGLQYLHEHTQPSIVHRDITSSNILLDSNFKAKIANFSLARTSMNPMIKKVDVFAYGVVLLELLTGKKSFINNENGEVTMLWKDIRGIFDVEDKRKERLRIWMDPKLGGFYPLDDALSLASLAVNCTAEKSLSRPTTGEVVLCLSLLTQHSPTTLERSWNYGIDVDVTEMVTPIVAR. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02538 520 Pfam Protein tyrosine and serine/threonine kinase 261 387 IPR001245 GO:0004672|GO:0006468
Seca11g02538 520 Gene3D Phosphorylase Kinase; domain 1 216 304 - -
Seca11g02538 520 ProSiteProfiles Protein kinase domain profile. 208 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02538 520 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 495 - -
Seca11g02538 520 Gene3D Transferase(Phosphotransferase) domain 1 305 388 - -
Seca11g02538 520 Gene3D Transferase(Phosphotransferase) domain 1 389 505 - -
Seca11g02538 520 ProSitePatterns Tyrosine protein kinases specific active-site signature. 357 369 IPR008266 GO:0004672|GO:0006468
Seca11g02538 520 SUPERFAMILY Protein kinase-like (PK-like) 249 488 IPR011009 -
Seca11g02538 520 SMART LysM_2 32 79 IPR018392 -
Seca11g02538 520 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02538 Seca-Chr11 42393857 42395419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02538 6 490 Receptor kinase-like Gene Family AT3G21630 28.519 1.06e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca11g02538 PK_Tyr_Ser-Thr 4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02538 - - vra:106777834 637.876