Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02530 ATGGGAATAGCAACACCTTCACCACTTCCTTCCACTCTCTCCCATTCAACACATTCGATCTTGTACAAAGCTGAACAAGACTCTTCCAATTCTATGTCCCAAGATTACCACAACCAGCAAGGAATCTTCACCTTCTCCAACGGCTTCGAGAGATCCAGTCATCCACAGCAACAACAAAGGGACAAAGTGAGGGTGCAAGGCTTCCAACCACCACTCGTAGGCATAGAAGACGAACCGGGAGGCCTTCCGGTGTATGAAACCGGAGGGATGTTATCGGAGATGTTCAATTTCCCTCCCGGCGCTGCTGAATTGTTGGAACAGCAGCAACAACAGCAACAGCAACAGCAGCAAGCAATGACGACGACGTTTCGATCGTCGTCTTCAAGGGGTATGGCAGTGGGGAGTTCGAGTACTAGTGCGGTGGGTAACGAGTGGTACGGAAACAGACAAGGGATGTTAAGTGGTTCAGGAGGAGCCTTGGGAGATTCAAAGAATAGCCGTGACAGTAGCACCAGCATACTTCACCATCATCATCATCAGATGTCAAGCATTAATGCCGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCACAAACCACCAGATCCCCTTCCCCTCATCATACCACCACCACTCCCTCCACTTCCTCTACTCTCCATATGTTGCTCCCTAATCCCTCCACCACTTCCCTCCAAGGCTATGGTTCTGGTCAACAAGGAGGGTCTTTTGGTCAATTCACATGGGCTCAAGAAGGAGCCGCCACAACAACCCACCATCCAGCTGAAATTGGAGGTGTTGTCGAAGGACAAGGTCTTTCCTTGTCCCTATCCTCTTCCTTGCAGCATTTAGAAGCGGCAAAAGCTGAGGAATTGAGAATGGGGGAAACTGGTTTTCTATATTACAATCAAGGTGGTGGTGTTAGTGGAGGTGGAGGAGCTTCTTCTTCGGTTCAATATCCCTACAAGAATCTTGGTCTTGGGAGTCATCATCATCATCAGAACCAGGCATTGCATATACAAGGGGGAATAGGAATAGGACAGAGCCACCAGGGACATATTGGGTTTGGGTCATCCACATCATCATCATCCTTGAGTGTGGTCAATGTGTTGAGGAACTCAAGGTATGCAAAGCCTGCACAGGAATTGCTTGAAGAATTCTGCAGTGTTGGGAGAGGACAGTTTAAGAAGAACAAGTTCAATAGACAGCTCTCAAACCCTAATTCAAATCCTGGTGGTGGTGGTTCTTCATCTTCATCAAAAGATGTTGTTCCTCCTTTGTCAGCTGCTGATAGAATTGAGCATCAGAGAAGGAAAGTCAAACTTCTAACCATGCTTGACGAGGCATCAGTTCCATACACATCATTAGCACAAAAAGCAATGTCTCGTCATTTCAGGTGTCTAAAGGATGCAATATCAGCACAACTGAAGCACAGTTGTGAGTTGCTGGGAGAGAAAGATGGGGCAGGGAGTTCAGGTTTGACGAAAGGAGAGACCCCAAGGCTTAAGATGCTTGAACAAAGCCTAAGACAACAAAGAGCGTTCCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTTCATCCGTACCCAAGCGATGCAGATAAGCATCGGTTGGCAAGACAGACTGGGCTATCAAGAAATCAGATTCTGCACTATAGTGTACCTTATCCTTCCCCAGAAAGACCAAAATCCAAAAGATACTACTACAATTGCACACAAGTATCAAATTGGTTCATTAATGCCAGGGTTCGATTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAGGAAACAGAAGAGAGAGAAAAGAATCAAAGCAGTAGCAACAATAGTAATGGCCAAATAGCGCAAACTCCAACAGCTTCAACCACAACAACAACAGCAACAGCGCCACCACCACCCCCACCATCAACACCAACGACAACAGGGAAAAGATCCGATATCAATGCAACCGAAAGCGACCCATCACTTGCAGCAATTAATAATAGACAAGGTTTCTCGGAAAACCAAGCAAAGATGATGCAGATGCACCATTCAACTTCCACCACCGTTATGGCAACCAAACCCACCGTGTCTGAGGTGGCGCCACCGGTTTCCGACTCGGTAATGATCACCGATGACACGTGTCGGCATGGTAGTAGCTTTGTTACGGGAGCAGATTACGGGACCGCGTCTGCTGCATCATCTTCTGACATTGGTTCGACTCTCATCAGATTTGGGACCACCGCCGGTGATGTGTCACTCACCTTAGGGCTACGTCACGCCGGGAACATGCCTGACAAAACCCCTTTCTCTCTTAGGGACTTTGGAGCTATTTAA 2406 0.4742 MGIATPSPLPSTLSHSTHSILYKAEQDSSNSMSQDYHNQQGIFTFSNGFERSSHPQQQQRDKVRVQGFQPPLVGIEDEPGGLPVYETGGMLSEMFNFPPGAAELLEQQQQQQQQQQQAMTTTFRSSSSRGMAVGSSSTSAVGNEWYGNRQGMLSGSGGALGDSKNSRDSSTSILHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPHHTTTTPSTSSTLHMLLPNPSTTSLQGYGSGQQGGSFGQFTWAQEGAATTTHHPAEIGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGETGFLYYNQGGGVSGGGGASSSVQYPYKNLGLGSHHHHQNQALHIQGGIGIGQSHQGHIGFGSSTSSSSLSVVNVLRNSRYAKPAQELLEEFCSVGRGQFKKNKFNRQLSNPNSNPGGGGSSSSSKDVVPPLSAADRIEHQRRKVKLLTMLDEASVPYTSLAQKAMSRHFRCLKDAISAQLKHSCELLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHRLARQTGLSRNQILHYSVPYPSPERPKSKRYYYNCTQVSNWFINARVRLWKPMVEDMYQQELKEAEETEEREKNQSSSNNSNGQIAQTPTASTTTTTATAPPPPPPSTPTTTGKRSDINATESDPSLAAINNRQGFSENQAKMMQMHHSTSTTVMATKPTVSEVAPPVSDSVMITDDTCRHGSSFVTGADYGTASAASSSDIGSTLIRFGTTAGDVSLTLGLRHAGNMPDKTPFSLRDFGAI. 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02530 801 MobiDBLite consensus disorder prediction 400 424 - -
Seca11g02530 801 Gene3D - 521 625 - -
Seca11g02530 801 MobiDBLite consensus disorder prediction 199 238 - -
Seca11g02530 801 MobiDBLite consensus disorder prediction 400 431 - -
Seca11g02530 801 SUPERFAMILY Homeodomain-like 528 618 IPR009057 -
Seca11g02530 801 CDD homeodomain 526 612 IPR001356 GO:0003677
Seca11g02530 801 MobiDBLite consensus disorder prediction 46 65 - -
Seca11g02530 801 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 196 638 - -
Seca11g02530 801 SMART HOX_1 526 615 IPR001356 GO:0003677
Seca11g02530 801 MobiDBLite consensus disorder prediction 670 686 - -
Seca11g02530 801 MobiDBLite consensus disorder prediction 46 64 - -
Seca11g02530 801 Pfam Homeobox KN domain 543 573 IPR008422 GO:0003677|GO:0006355
Seca11g02530 801 SMART prehox3 365 474 IPR006563 -
Seca11g02530 801 MobiDBLite consensus disorder prediction 621 686 - -
Seca11g02530 801 Coils Coil 614 634 - -
Seca11g02530 801 ProSiteProfiles 'Homeobox' domain profile. 523 611 IPR001356 GO:0003677
Seca11g02530 801 MobiDBLite consensus disorder prediction 107 179 - -
Seca11g02530 801 Pfam Associated with HOX 449 473 IPR006563 -
Seca11g02530 801 Pfam Associated with HOX 370 448 IPR006563 -
Seca11g02530 801 MobiDBLite consensus disorder prediction 107 145 - -
Seca11g02530 801 MobiDBLite consensus disorder prediction 634 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02530 Seca-Chr11 42191778 42197811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02530 1 577 Homeobox Transcription Factor Family AT4G36870 46.390 5.12e-121 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02530 - - gmx:100814959 764.222