Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02524 ATGAGGATATCAGAGGTCTTGAGTTTGATTCTGAAGAGGGATGCATATGTTTTCTACCGTGAGTATGCAAAATTCATAGGGTTTACTGTTAGGAAACATGATGTGTATAGAGATCGTAATGATGTAATTACAATGAGACAAGTGGTATGTAACAAGGAGGGAGAGAGAAGTGGGAAGCACCTTAATAGGACTGATAGAAAGAGGGAGACAAAGGCCATTACACGAACAAAATATAATGTAAGGCTCCGAATTCATTTAGATTATAAGAGTAGGAAGTTGATGGTCGGTTCTTTTGAGCTAGGTCACAACCATGAATTGACTCTTGCGAGTATGGTACATTTGCTACTAGGTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGACGATCTACATCATTACAGTGTTAGGACTTGCCATATTATGGGGCTTCTAATGGGTCAGAGGGGGTTATTCTGA 462 0.4026 MRISEVLSLILKRDAYVFYREYAKFIGFTVRKHDVYRDRNDVITMRQVVCNKEGERSGKHLNRTDRKRETKAITRTKYNVRLRIHLDYKSRKLMVGSFELGHNHELTLASMVHLLLGYRGLSVADKAQVDDLHHYSVRTCHIMGLLMGQRGLF. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02524 153 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 151 - -
Seca11g02524 153 Pfam FAR1 DNA-binding domain 18 107 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02524 Seca-Chr11 41904688 41905149 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02524 FAR1 5.8e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02524 - - ccaj:109792835 149.443