Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02521 ATGGAAGCACTTTCTTCTTCTGATGTTCAATATGCTGGGGAATCTGATTTCTCTCAGCCAAATTCAGGAACAGCTTATGTGTACCAGGGAGAAGCTAATTGCCCTGAAAATGGTAAACAATTGGAAGCTGATCAACTGAAGGACTCATTACTAAAGATGGAAGAGCCTCATATAAAAAGGCAAGGTCAAGTGCAACAGAAACACTTGACTAATTCAGATTTCAAATGTGGTGGAGCTTCTTTCCATGATGAAATAAATAAAACTTTCTTAACCTCTGAGAACTCTCTCTCTATTGTGCATATGATTGAAAGTGAATCACAAAACAACAGTAGGGAAGGAGAATTGCCATTTTCTGAACCCACTTGGCTGCAGGGGGATGAGTCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAAATGTGCAAGGGCTGACTGGCCATTATCAACCTTGAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTGATTTTTTTCCCGCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTAGATCAATTGATGAGTTTCCTCTGCCTATAGCATATAAAACCCATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCACGACGGTTTATAATGCAAAAGCTAGTCCTTGGCATGCTGAACATTGTCGATCAGCTTCATTCTAATGCTATGATAGAAACTGCCCGTGATGTCATGGTTTGGAAGGAATTTGCTATGGAGGCTTCTCGCTACAACGGTTATTCAGATTTTGGAAGAATGCTTCTAAAGCTGCGAAATAGCATAGTGCAGCACTACATAAATGCTGACTGGATAAAACATTCATCTTACTCTTGGGCTGAACGATGCCAGAATGCTAAGAGTGCTGAATCAGTAGAGCTTCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGGTGCACTGATGCAGCCAACGTTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTTCCTTCCTTTTCTAGTAGCAAGGACTTGCAGCAGCAGACCTCTGATGGTTTATACCAAGTAAGCCTTCAAATTGGTAGAAAAAGGCCCAAACTTGAAATTCGTCGTGCAGATACACATGCTTCACTGGCAGTAACCAAGGGTTCAGACCACTCTATTACTCTTGAAACTGACCCAGGTTTCTTTAAGAATCAGGGCACATTGAGTGCACTGGCAGCTGAGACTTCTCAACAGGAAGATGTTAGAGAGGTACCTATAGCAACTGATTTACCTAGTAATTTGAGCAATCAATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTAAGATCTTGGACAGCATTGGAAAGGAATTAATACCAGTTGATGAAATGGCTGGTCAGAAATTTATAGAATCTGCTACTAAGAATCGGCAATGTATAGCTTATATTGAAGCCAAGGGGAGGCAGTGTGTGAGATGGGCAATTGATGGTGATGTATACTGTTGTGTGCATTCTCGTTTTTTGGGAAGCTCAGGAAAAGCCAAAAGATCTGGTTTAATTGATACTCCAATATGTGGAGGCACAACTGTTCTTGGTAGTAGATGTAAGCATCATTCAGCTCCTGGCTCTTCATTCTGTAAGAAACACCAGCCCCATGCTGAAACAGAAGATACCTCAAATTTAACCCATCATAGACTGAAGAGGAAACGTGAAAATTACACTGGTTCAGATGGCTTGATTTGCAAAGACATGGTATTGTTAAATGCTGATAGTCCACTGCATGTAGATCCAGTGTCAGCCATTGATGGTGATTCTTTCCTTGGAAGAAACAGCTTTGGTGAGAAGCTTATCCTTTCTGGCAATGATTGTAAAGCAACAGAGCCACTTCACTGTATAGGATCTCCTCCAAATGATAATGAGGACCCTTGTTTGGAAGCACCAACCCGGTATTTCTTGTACTGTGAAAAGCACCTTCCAACCTGGCTTAAATGTGCAAGAAATGGGAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTGAGGGACTGCTGCTCATGGGAGGAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTTTACATGCTATTCAAAAGCATTTTGTCGTTAAAAAATCCATTACCTAAGGAAGTTCAATTCCAACAGGCCTTGACTGAAGCCTCAAAAGATTCTCATGTTGGAGAATTATTTAGAAAGTTGGTTAATAGTGAAAAGGATAATATAAAATTGAATTGGGGATTCAATGATGACATATCCTCACTCATGGAAGGACCACCTCTCCTACTACCTTCCACGATTAATGACAGCTTTGATGATGAAAATGTCATTAAGTGTAAGATCTGCGGTGCAAAATTTCCTGATGACCAAACACTTGGTAACCATTGGATAGACAATCATAAAAAGGAAACACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTGATCATTTTGGAAATATGGAACAATTATGGTTGCATGTCGTGTCAGTTCACCCTGTTGAACTTAAGCCATCAAAAGATCCTGAGCAGGGAACTTTGTCTAATGGCAAGGATTCTCCAGAAAAACTTGAGCAGGGAAATTCAGTTTCATTGGACAATAATTCTGAGAATCCAGGTGATTTGCGGAAGTTCACTTGCAGGTTCTGTGGGTTGAAATTTAATTTACTACCTGACCTAGGTCGCCATCATCAAGCTGCTCATATGGAACGCAATATAGTCAAGAGCCGCCCTGCAAAGAAGGGAGTTCGTTATTATGCTCATAAATTAAAATCTGGCAGACTTAGCCGTCCTAAATTTAAAAAAGGTTCCACAGCAGCATCATATAGGATCAAGAATGCAGGTAATGCTAATTTAAAGAGACATATTCAGTCAACAAAGTCACTTGACATGGGAGAAACAAGCATGCAACCTCAAGTAACTAAGACAGCAAATTTTGGTGAACTGACAGAAAATCAATGCTCAGCAGTTTCAAAGATAATGTTTTCTGAGAGTCAGAAGACTAAACCCCGGCCTAACAATCTTGAAATTTTGTCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTAAAGCCTCGCTGGAGGAAAAATATGGAACTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAGACTTTGCAGTGAGCATGAAATTCTAGTGAATTGGCATCAGGAGGGGTTCATTTGTCCAAGAGGTTGTAAGGAATTTAAGGATCAAAGACTGCTCTCTCCCTTAGCATCTGTTTCTAATGGCTTCCCAAAGCCAAAATTTGTTTCTAATGTATCAGTTCCTGCAAGCAATGAGTTGGAAGTGGATGAGTTTCACTACATCATCAATTCACACCATTTAAAGCTAGGGTCCTTGCAGAAGGCTGTAGTATTATGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGAAATTCTAAATTCCCATCTTGGCTATGGGCCCAATGAGTATGATAATCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTTGTCTTGATTCCGAGAGTTTGCAACTGAGATGCGCTTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTCATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGATAGGTTCCCATATGATGAAAATGGTCGAATAATACTGGAGGAAGGTTACCTTGTGTATGAGTGTAGCCGTATGTGCAGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGAGTAAGGGCTGGTGAGGCTATTATGCGTGGAACATTTGTGTGTGAATACATTGGAGAGGTTTTACATGAGCAGGAGGCACACAACAGACGCAAAAGATATGGCAAAGAACATTGCAGTTATTTCTTTAAGGTTGATGCTCATATTAATGACATGAGTAGATTGGTCGAAGAACAGGCCCGATATGTCATTGATGCTACTAGATATGGAAATGTCTCTAGGTTCATCAATAACAGCTGCTCACCCAATCTTGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGATCGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTGTGGGTGAAGAATTGACATTTAATTATCATTATGAGCTTGTGCCTGGAGAAGGATCTCCTTGTCTTTGTGGATCTTCGAATTGCCGGGGACGCCTTTACTAG 4434 0.4057 MEALSSSDVQYAGESDFSQPNSGTAYVYQGEANCPENGKQLEADQLKDSLLKMEEPHIKRQGQVQQKHLTNSDFKCGGASFHDEINKTFLTSENSLSIVHMIESESQNNSREGELPFSEPTWLQGDESVALWVKWRGKWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIDEFPLPIAYKTHQAGLKMVKDLTVARRFIMQKLVLGMLNIVDQLHSNAMIETARDVMVWKEFAMEASRYNGYSDFGRMLLKLRNSIVQHYINADWIKHSSYSWAERCQNAKSAESVELLKEELFDSILWNDVNTLWGALMQPTLGSEWKTWKHDVMKWFSTFPSFSSSKDLQQQTSDGLYQVSLQIGRKRPKLEIRRADTHASLAVTKGSDHSITLETDPGFFKNQGTLSALAAETSQQEDVREVPIATDLPSNLSNQWNEIVVEAADSKILDSIGKELIPVDEMAGQKFIESATKNRQCIAYIEAKGRQCVRWAIDGDVYCCVHSRFLGSSGKAKRSGLIDTPICGGTTVLGSRCKHHSAPGSSFCKKHQPHAETEDTSNLTHHRLKRKRENYTGSDGLICKDMVLLNADSPLHVDPVSAIDGDSFLGRNSFGEKLILSGNDCKATEPLHCIGSPPNDNEDPCLEAPTRYFLYCEKHLPTWLKCARNGKSRIISKEVFTEILRDCCSWEEKVHLHKACELFYMLFKSILSLKNPLPKEVQFQQALTEASKDSHVGELFRKLVNSEKDNIKLNWGFNDDISSLMEGPPLLLPSTINDSFDDENVIKCKICGAKFPDDQTLGNHWIDNHKKETQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGDHFGNMEQLWLHVVSVHPVELKPSKDPEQGTLSNGKDSPEKLEQGNSVSLDNNSENPGDLRKFTCRFCGLKFNLLPDLGRHHQAAHMERNIVKSRPAKKGVRYYAHKLKSGRLSRPKFKKGSTAASYRIKNAGNANLKRHIQSTKSLDMGETSMQPQVTKTANFGELTENQCSAVSKIMFSESQKTKPRPNNLEILSIARSACCKVSLKASLEEKYGTLPERLYLKAARLCSEHEILVNWHQEGFICPRGCKEFKDQRLLSPLASVSNGFPKPKFVSNVSVPASNELEVDEFHYIINSHHLKLGSLQKAVVLCDDISFGKESIPVICVVDQEILNSHLGYGPNEYDNLSRPWESFTYVTKPMLDQSLCLDSESLQLRCACSFSTCCPETCDHVYLFHNDYDDAKDIFGKPMRDRFPYDENGRIILEEGYLVYECSRMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAIMRGTFVCEYIGEVLHEQEAHNRRKRYGKEHCSYFFKVDAHINDMSRLVEEQARYVIDATRYGNVSRFINNSCSPNLVSYQVLVESMDCDRAHIGLYANRDIAVGEELTFNYHYELVPGEGSPCLCGSSNCRGRLY. 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02521 1477 ProSiteProfiles Zinc finger C2H2 type domain profile. 930 958 IPR013087 -
Seca11g02521 1477 ProSiteProfiles Zinc finger C2H2 type domain profile. 793 821 IPR013087 -
Seca11g02521 1477 ProSitePatterns Zinc finger C2H2 type domain signature. 932 953 IPR013087 -
Seca11g02521 1477 Gene3D Classic Zinc Finger 781 854 - -
Seca11g02521 1477 MobiDBLite consensus disorder prediction 558 576 - -
Seca11g02521 1477 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g02521 1477 Gene3D SET domain 1172 1477 IPR046341 -
Seca11g02521 1477 Pfam Zinc finger C2H2-type, 3 repeats 829 954 IPR040689 -
Seca11g02521 1477 ProSiteProfiles SET domain profile. 1322 1454 IPR001214 GO:0005515
Seca11g02521 1477 MobiDBLite consensus disorder prediction 889 922 - -
Seca11g02521 1477 Pfam SET domain 1333 1453 IPR001214 GO:0005515
Seca11g02521 1477 SMART set_7 1322 1460 IPR001214 GO:0005515
Seca11g02521 1477 ProSiteProfiles Post-SET domain profile. 1461 1477 IPR003616 -
Seca11g02521 1477 MobiDBLite consensus disorder prediction 555 576 - -
Seca11g02521 1477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 31 1477 - -
Seca11g02521 1477 Pfam Pre-SET motif 1183 1314 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g02521 1477 ProSitePatterns Zinc finger C2H2 type domain signature. 795 816 IPR013087 -
Seca11g02521 1477 ProSiteProfiles Zinc finger C2H2 type domain profile. 827 850 IPR013087 -
Seca11g02521 1477 ProSitePatterns Zinc finger C2H2 type domain signature. 863 884 IPR013087 -
Seca11g02521 1477 SUPERFAMILY SET domain 1172 1467 IPR046341 -
Seca11g02521 1477 SMART PostSET_3 1461 1477 IPR003616 -
Seca11g02521 1477 SMART c2h2final6 827 850 IPR013087 -
Seca11g02521 1477 SMART c2h2final6 793 816 IPR013087 -
Seca11g02521 1477 SMART c2h2final6 930 953 IPR013087 -
Seca11g02521 1477 SMART c2h2final6 861 884 IPR013087 -
Seca11g02521 1477 SMART preset_2 1180 1306 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g02521 1477 MobiDBLite consensus disorder prediction 894 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02521 Seca-Chr11 41836382 41847952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02521 112 1476 C2H2 Transcription Factor Family AT2G23740 50.937 0.0 1346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca11g02521 Pre-SET 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02521 - - gmx:100808203 2325.82