Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02510 ATGGACCACCACGATTCTGGATTGTCATTAGAGCCTTCCTTAGAGCCTTATGAAGGAATGGAATTTACATCAATTGAAGATGCAAAGAATCACTATACAAGGTATGCAAAGAACAAGGGTTTTAGCTTTCGCATGGGTCGTATTACTAAATCAAGAACAAATGGTATGATGATTGGTCAAGAGTTCGTTTGTTCAAAGGAGGGGTTTCGAAAAAAAAATGGAGAAAGGGTAGATGGTAGCTTTTCAGCACGTGATGAAACAAGGGTAGGATGCAAAGCAATGGTTTATATAAAGAAAAATGAAGATGGGTGGATTGTTTCTAGATTTGTAAGAGACCATAATCATGAACTTTTTTCCCCAAGAAGTTCAAAATTTCTTCGAGTACATAAAAAGAAAACTAGAGTGCAAAATAAACTTATTGATGTGCTTGATGATTCTGGTTTGCGTCCTAGCAAAATAGCATCTGTGTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGAATTAGCCAACAAGATGTTATCAATTACTTAAGTGAGAAGAGGCTGAAGCAATTAGAGAAAGGAGATGCCCAGTTGATGTTATCATATTTTAAGAATTGTCAATTGAAGAATACTGGGTTGTTCGATGCATTTCAAATGGATGCAGAAGGACAGTTAGCGAATTGCTTTTGGGTTGATTCTAGGTCTAGAATGGCTTACAAATATTTTGGTGATGTGGTCACTTTTGATCCAACATACTTAACAAATCAAGATGCCGCTATCACTAATGCAGTGGCAAGGGTGTTTCCAGATGTTAATCATCATTATTGTATGTGGCATATTGGGAAAAAACTTCCAGAGTACTTGAATCATATTTACCATGAACATAGTGATTTCAAGAATAAATTTTACAAGTGCATTCATCAATCTATCACTATTGAAGAATTTGAATCTGATTGGGAAGCAATGATAGATACATATGGATTGCAAGATAACCAGTGGCTGCAGAAGATATACTCAATTAGAGAAAAATGGATTCCTGCTTATGTGCGTCATAATTTTTGTGCTGGAATGTCCACCACCCAAAGGAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTCAAGTACTCCATTGAGCAAGTTTGTGACACAATATGAGAAGGCTCTTGATGCATGTTATAACAAGGAAAGAGAGAATACTTTCAAGACAATGAATTCAAAACCTTTTTTGCGAACTTTATATCCTATGGAAGAAGAAGCTTCAAAAATTTATACAAGAAAGCTGTTTAGGATATTTCAAGATGAGTTGGTTGGCTCTCAAAAGTTTATTGCAGAGAAAATTGGATTTTCCACTGAAGTGTCCACATATAAAGTTCATGAAATTTACCAAGAGAAGCCTAACTATTATGTGTCTTTTCATGTTAGTTCAAAAGAAGCAAATTGTAGTTGTCACATGTTTGAATTTGTGGGCATTCTTTGTAGACATGTACTAGCTGTTTTTATCAAGAAAAAGGTTCACTCTCTCTGTTTGCAGTATATTCTTCCTCGATGGACCATTAACGCTAAGAAGGAGAGGGTCAAAGGATTCGCAAGTGAAGAATTACAGGAGGGTGGAAACAAAGCTTCTAGTTTACAAAAGTTAATTGAAGATCTTGATCTAGTGGAGGTTGAAGAATCAAAGGAAGAGTTTGGCACTTCAACAACTCAAGTTATTCCAAATGTCTCTAACAATATTATAACTTTGCGTGATCCTCCACTTGTGGCAACTAAAGGGCGTCCACGAACTTTACGAATGAAAGGCAGCTTGGAATTGCTCAAAAAAGGTTCCTCTACTTGCAGTTATTGTAAGAAGAAAGGTCATAGTAAACGTAAATGTCCAAGTTTAAATCAAGCAAGGTGTCATATTGTTAGTAGTCAACATCCAATTACTAATGTTGAAGCTACTAATTTTGTTGAATCAAAGGATTTTATGGAAGCATAA 1971 0.3546 MDHHDSGLSLEPSLEPYEGMEFTSIEDAKNHYTRYAKNKGFSFRMGRITKSRTNGMMIGQEFVCSKEGFRKKNGERVDGSFSARDETRVGCKAMVYIKKNEDGWIVSRFVRDHNHELFSPRSSKFLRVHKKKTRVQNKLIDVLDDSGLRPSKIASVLCTESGGIDNVGISQQDVINYLSEKRLKQLEKGDAQLMLSYFKNCQLKNTGLFDAFQMDAEGQLANCFWVDSRSRMAYKYFGDVVTFDPTYLTNQDAAITNAVARVFPDVNHHYCMWHIGKKLPEYLNHIYHEHSDFKNKFYKCIHQSITIEEFESDWEAMIDTYGLQDNQWLQKIYSIREKWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFVTQYEKALDACYNKERENTFKTMNSKPFLRTLYPMEEEASKIYTRKLFRIFQDELVGSQKFIAEKIGFSTEVSTYKVHEIYQEKPNYYVSFHVSSKEANCSCHMFEFVGILCRHVLAVFIKKKVHSLCLQYILPRWTINAKKERVKGFASEELQEGGNKASSLQKLIEDLDLVEVEESKEEFGTSTTQVIPNVSNNIITLRDPPLVATKGRPRTLRMKGSLELLKKGSSTCSYCKKKGHSKRKCPSLNQARCHIVSSQHPITNVEATNFVESKDFMEA. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02510 656 Pfam SWIM zinc finger 471 500 IPR007527 GO:0008270
Seca11g02510 656 ProSiteProfiles Zinc finger SWIM-type profile. 465 501 IPR007527 GO:0008270
Seca11g02510 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 539 IPR031052 GO:0006355
Seca11g02510 656 SMART 26again6 476 503 IPR006564 GO:0008270
Seca11g02510 656 Pfam FAR1 DNA-binding domain 31 118 IPR004330 -
Seca11g02510 656 SUPERFAMILY Retrovirus zinc finger-like domains 603 627 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02510 Seca-Chr11 41202228 41204640 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02510 FAR1 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02510 - - psat:127129645 834.713