Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02501 ATGTTTCCTCACCAGACGAAGTTTGCTTTTATCTTCACAATCTTCATCTTCTGGTCAACAAGCGCACAAAACAACTATAACTGCGATCGTAGTTGTGGAGAACATTCCCTGCAGTATCCTTTTGGATTCTCTGCTGGTTGTGAAGTCAAACTAAACTGCAACAACAGTAAAGTCAAAATTGGCGAGTTACAGGTTCAGAACGTAACCTCCGATAGCATATTCATCGGTGTTCCAGCGAAATGCAACCGTAGCATCGATTTCATAGACCCACTTTTCGGTCAGAACTTTGCTCCCACACGGAACAACACATTTCTTGTGCAGAATTGTTCGTCCAAGTCCAAGCTCGGTGGCTGCGTTATTCCCCCTTCAAGTTTCGTTCAGATACCTGTGGAGGGTTGTAATAATGGAAGTGATAATATAGATTGCTACACGCAATTGCAGCCTCAGAATCCGTATGAAGATGTCCTCAAAAAAGAGGTTTGGAAGGGAATTGGGTGCAAGTACCTTTTCTCTACTATTGTTGTTGATAAGAGCAAAGTCAAAGAGCTTTCGCTTCAATTTCAAGTGATTGAATTAGGGTGGTGGCTTCAAGGAACGTGTAATTGCCATGTCAATGCAACCTGTACAGAGATACATCTTGCAGGAGGAAGACAAGGTTTCAGGTGCCGCTGCCATGAAGGTTTAATCGGAGATGGATTCGTGAACGGCACTGGTTGCCGGAGAGGTGACTCAGTATCAGTTCAATGCAATGCTTCAACACTGGGGTCTAATGGATGTGGAAAAGCAGTCAAAATTGGAGTCCTTGTTGGAGGGATCACAATTGGAGGCTCCATAGTGGCTGCCCTGTTTCTTGTATGTTACTTTGCCAAGCGTCGTTCCACATGGCTGAGAAAACAATTGACAGTAAAGCGCCTGTTAAGAGAAGCTGCAGGCAGTTCTATTGTTCCTTTGTACCCTTACAAAGAAATAGAAAGAGCCACAAATTTTTTCTCTGAGAAACATAGGCTGGGAACTGGTGCTTTTGGCACAGTTTATGCTGGAAACCTTCACAATGATGAGTGGGTTGCTATTAAAAAGATCAAGTACAGAGACACCAATAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTGCGCCTCCTAGGTTGCTGCATAGAAAAGGGAGAGAACATACTTGTTTATGAGTATATGCCCAATGGAACACTATCTCAACATTTGCAAAGAGAGAGGGGTGGAGTGCTTCCATGGGTAGTAAGACTCACCATTGCCACTGAAACTGCTAATGCTATAGCATATCTCCATTCGGCAATTGATCCTCCAATTTATCACAGAGACATAAAATCCAGTAACATACTCTTGGACTATAGCTTTCAATCAAAAGTAGCAGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCACATATCTCAACTGCCCCACAAGGGACCCCAGGCTATGTTGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAAAGTGATGTATACAGTTTTGGGGTGGTTTTGGTAGAGATCATAACGGCCATGAAAGTGGTTGATTTTGCTAGACCTCAGAGTGAGATCAATTTGGCAGCACTTGCGGTTGATAGGATTAGGAGGGGTTGTGTAGATGACATCATAGATCCCTTCCTTGAACCACATAGGGATGCATGGACACTATATTCTGTTCACAAGGTGGCTGAGCTAGCATTTAGGTGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATTGAAGTAGCTGAGGAGCTAGAACACATAAGACGCAGTGGGTGGGCAACTATGGAGGAAACTATATGCATGGCTTCATCAGTTGGGTCTGAGTGTTCATCATTTCATAATGGAATTGAGAATTTGCCAAGTGGTATTAGTATGGAGAGAGCAGGACCAAGGAGTGAGACATTGATTGTTCCAAATAAGACTGATAGTTTTTTTCAATCAATGGAGGAGGTGAAGGACAGCTCCCCAGTGTCTATGCATGATACTTGGTCAAGTGGACCTAGCTCACCTTCAACAAACAGCTTGCTGGGAAATGTAGCTCGCTGA 2100 0.4352 MFPHQTKFAFIFTIFIFWSTSAQNNYNCDRSCGEHSLQYPFGFSAGCEVKLNCNNSKVKIGELQVQNVTSDSIFIGVPAKCNRSIDFIDPLFGQNFAPTRNNTFLVQNCSSKSKLGGCVIPPSSFVQIPVEGCNNGSDNIDCYTQLQPQNPYEDVLKKEVWKGIGCKYLFSTIVVDKSKVKELSLQFQVIELGWWLQGTCNCHVNATCTEIHLAGGRQGFRCRCHEGLIGDGFVNGTGCRRGDSVSVQCNASTLGSNGCGKAVKIGVLVGGITIGGSIVAALFLVCYFAKRRSTWLRKQLTVKRLLREAAGSSIVPLYPYKEIERATNFFSEKHRLGTGAFGTVYAGNLHNDEWVAIKKIKYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGENILVYEYMPNGTLSQHLQRERGGVLPWVVRLTIATETANAIAYLHSAIDPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEINLAALAVDRIRRGCVDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEHIRRSGWATMEETICMASSVGSECSSFHNGIENLPSGISMERAGPRSETLIVPNKTDSFFQSMEEVKDSSPVSMHDTWSSGPSSPSTNSLLGNVAR. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02501 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Seca11g02501 699 MobiDBLite consensus disorder prediction 666 699 - -
Seca11g02501 699 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Seca11g02501 699 Gene3D Phosphorylase Kinase; domain 1 292 405 - -
Seca11g02501 699 FunFam Wall-associated receptor kinase-like 20 406 615 - -
Seca11g02501 699 Gene3D Transferase(Phosphotransferase) domain 1 406 622 - -
Seca11g02501 699 SUPERFAMILY Protein kinase-like (PK-like) 312 603 IPR011009 -
Seca11g02501 699 FunFam Wall-associated receptor kinase-like 14 297 405 - -
Seca11g02501 699 Gene3D Laminin 198 235 - -
Seca11g02501 699 SMART serkin_6 330 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02501 699 ProSiteProfiles Protein kinase domain profile. 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02501 699 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 686 IPR044652 GO:0004672
Seca11g02501 699 Pfam Protein kinase domain 331 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02501 Seca-Chr11 40730190 40734541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02501 1 699 Receptor kinase-like Gene Family AT2G23450 53.239 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca11g02501 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02501 - - gmx:100793114 1066.22