Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02450 ATGGGAGAGATCACGCAACTTGTTACCTATACTCCACAACTTCAAGACACCTTGAGGATCAAGATCTTGCAAATGGTGGAAAAAGCTCGAAAGAGCAAGAAGACAAGGCACATTCTAAGGTCAACTCTCAAGGATTTGGCTCCTCTGGTACAGGAGATTAAGACATACAACGAACACTTGGATGCACCAAGAGAAGAAATAAAGACTCTCATCAAAGAAAAAGATGCAGGGGAAAATGAAGAGCAATTTGTGTCCAAATGCTCCTCCAGGAATCTTTGGTTGGAGTGGAACAAGTGTCTGTCCTGGCTTCATCAGTTCTGCATGGACAGTGTTTGGCATAATTCCTCTGCTGCTGCTGATGACAAGCAAGCTCTTACAGCAAAGGATGTTAAAGATACACTTAACGAGGTGAGAGAAATTCTTGAGCTTCTTAACAAAGAAAATTTTGAGCAGAAGTTTATTCCAGCTGGAGTAACAATCAAGCGCCCTTACGGTGTTCCTGAAAACACTGAATTCACTGTTGGTTTGGATGTACCGTTGAACAATTTGAAGAGGGAGCTTCTCAAGGATGGTATGTCGATCCTTGTCTTGACTGGTTTGGGAGGATCGGGAAAAACCACTTTGGCCATAAAGCTCTGCTGTGATGAACAAGTCAAGGGTAAATTCATGGAAAATATTTTATTTGTCACCTTCTCAAAAACGCCCAAGTTGAAGATTATTGTAGAGAGACTATTTGAACACTTTGGATATCAAGTGCCTGAGTTTCAAAGTGATGACGATGCAATAAATCGACTGGGACTAGTGTTGAGGAAAAATGAGGGATGTCCAATGTTGTTGGTACTGGATGATGTTTGGCCTGGCTCAGAAGACCTTGTTAGGAAATTTCAATTCCAGATATCAGACTATAAAATTTTGGTGACTTCAAGAGTTGCATTTCCTAGATTTGGCACAACATTTACCTTAAAACCTCTTGTTCATGATGATACAATAACCCTTTTCCGTCATTATGCTCTCTTGGACAAAAGCAGTTCAAATATTCCTGATGAAGATCTTGTCCAAAAGGTTGTGAGAAATTGCAAGGGTTTACCACTTGCCATTAAAGTGATTGGTACATCACTCAGTTGTAGGCCTTATGAGATGTGGCAAAAGATGGTGAAGGAAGTGTCGCAAGGTCATTCTATACTTGATTCCAATACTGAAATACTTACTCGCCTCCAAAAGATCTTGGATGTTGTAGAAGATAATAATCCCATCATCAAGGAGTGCTTCATGGACCTAGCATTATTCCCTGAAGACCAAAGAATTCTTGTTGCTGCTCTCATTGATATGTGGGCAGAGTTGTATGGACTAGATGACGACGGCGTAGAAGCAATGTCCATCATCAACAAATTAGACTCCATGAATCTGGCTAATGTCTTAGTAGCAAGGAAAAATGCAAGTGATGCAGACAATGACTACTACAATAACCACTTCATCGTTCTTCATGATCTTCTAAGAGAGCTTGGAATTTATCAAAGCACACAGGAAACGATTGAACAGAGAAAAAGACTGATCATTGACATAAATGAAAATAAACGTGAATGGTGGTTTGGAGAGAAGCAGCAAGGTATGATGGTTCGCATATTGTCAAAATTTCTTAGATGGGGTGTCAAACAGAGTCCCCAACAGGTCCCTGCCCGCACATTGTCTATATCAACTGATGAAACTTGCGCTTCATATTGGTCTCACATGCAACCGGCTCAAGCTGAGGTGCTGATACTAAATCTTCGGACAAAGCAGTATTCATTTCCAGCGTTCATGGAGAAACTGAGTAAACTAAAAGTTCTGATTGTTACAAATTACGGTTTCCATCCTTCTGAACTGAACAATACCAAGCTACTTGGCTCTTTATCAAGCCTGAAAAGAATAAGACTAGAGAGGATTTCTGTTCCTTCATTTGGCACGTTGAATAATCTTAAGAAACTATCCCTCTACATGTGTAATACGAGTCATGCTTTCAGAAACGGTATGATCCTAAGTTCTAATGCATTTCCAAATCTAGAAGATTTGAACATTGACTATTGCAAGGATTTGGTGGAATTGCCTTCTGGGGTCTGTGATATCACCCCACTAAAGAAGCTCAGTATTACTAATTGCCACAAGCTCTCTGTGTTGCCCCAACAAATTGGAAAGTTGGAGAATTTGGAACTATTAAGGCTGAATTCCTGTACTGATTTGGAAGGAATGCCAGATTCTATTGGAAGGCTTTCAAATCTGAGACTTCTTGACATCTCAAACTGCATAAGCCTTCCAAATTTACCGGAGGGAATTGGCAATCTGTGTAATCTAAGAAATCTCTACATGACAAGTTGTGCAATGTGTGAATTGCCATTCTCAGTGGTTAATCTCAAGAATTTAAAGGTGACATGCGATGAAGAGACGGCTGCTTCATGGGAAGCTTTCAAACCTATGATTTCCAATTTAGAGATAGAGGTTCCTCAAGTTGATGTTAACTTAAACTGGCTTCACTCGATTCGCTCCTAA 2523 0.4019 MGEITQLVTYTPQLQDTLRIKILQMVEKARKSKKTRHILRSTLKDLAPLVQEIKTYNEHLDAPREEIKTLIKEKDAGENEEQFVSKCSSRNLWLEWNKCLSWLHQFCMDSVWHNSSAAADDKQALTAKDVKDTLNEVREILELLNKENFEQKFIPAGVTIKRPYGVPENTEFTVGLDVPLNNLKRELLKDGMSILVLTGLGGSGKTTLAIKLCCDEQVKGKFMENILFVTFSKTPKLKIIVERLFEHFGYQVPEFQSDDDAINRLGLVLRKNEGCPMLLVLDDVWPGSEDLVRKFQFQISDYKILVTSRVAFPRFGTTFTLKPLVHDDTITLFRHYALLDKSSSNIPDEDLVQKVVRNCKGLPLAIKVIGTSLSCRPYEMWQKMVKEVSQGHSILDSNTEILTRLQKILDVVEDNNPIIKECFMDLALFPEDQRILVAALIDMWAELYGLDDDGVEAMSIINKLDSMNLANVLVARKNASDADNDYYNNHFIVLHDLLRELGIYQSTQETIEQRKRLIIDINENKREWWFGEKQQGMMVRILSKFLRWGVKQSPQQVPARTLSISTDETCASYWSHMQPAQAEVLILNLRTKQYSFPAFMEKLSKLKVLIVTNYGFHPSELNNTKLLGSLSSLKRIRLERISVPSFGTLNNLKKLSLYMCNTSHAFRNGMILSSNAFPNLEDLNIDYCKDLVELPSGVCDITPLKKLSITNCHKLSVLPQQIGKLENLELLRLNSCTDLEGMPDSIGRLSNLRLLDISNCISLPNLPEGIGNLCNLRNLYMTSCAMCELPFSVVNLKNLKVTCDEETAASWEAFKPMISNLEIEVPQVDVNLNWLHSIRS. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02450 840 Gene3D Ribonuclease Inhibitor 552 814 IPR032675 -
Seca11g02450 840 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 22 835 IPR039203 GO:0050832
Seca11g02450 840 PRINTS Disease resistance protein signature 359 373 - -
Seca11g02450 840 PRINTS Disease resistance protein signature 194 209 - -
Seca11g02450 840 PRINTS Disease resistance protein signature 271 285 - -
Seca11g02450 840 PRINTS Disease resistance protein signature 747 763 - -
Seca11g02450 840 Coils Coil 127 147 - -
Seca11g02450 840 Gene3D - 159 312 IPR027417 -
Seca11g02450 840 Gene3D - 324 413 IPR042197 -
Seca11g02450 840 SUPERFAMILY RNI-like 593 800 - -
Seca11g02450 840 Gene3D - 414 502 IPR036388 -
Seca11g02450 840 Pfam NB-ARC domain 180 390 IPR002182 GO:0043531
Seca11g02450 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02450 Seca-Chr11 39249869 39254048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02450 629 799 WRKY Transcription Factor Family AT4G12020 28.718 4.79e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02450 - - gmx:112997603 1112.44