Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02443 ATGGATCGGGCGGCGATGACGGTTGGACCAGGCATGGACCTGCCGATCATGCATGATAGCGACCGTTACGATCTGGTCCGGGATATCGGGTCCGGGAATTTCGGCGTGGCGAGGCTGATGCAGGACAAGCAGACCAAGGAGCTCGTTGCCGTCAAGTATATCGAACGGGGTGATAAGATTGATGAAAATGTCAAGAGAGAAATTATTAATCACAGATCTCTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATGACATTTATCTACAATGCTCTATTAAATTTCATTCAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTTTTTGATCGAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGCCACGCAATGCAAGTATGCCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAACACCTCGCTTGAAGATCTGTGATTTTGGTTACTCCAAGTCTTCTGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTACTGAAACAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGTTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGATTTCCGGAAGACAATTCAGAGGATTCTCAGTGTCCAGTATGCCATTCCAGACTTTGTCCAAATATCTCCAGAGTGTCGTCAGCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATGCGGGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCAGAGCTTATGGATGAGAAGATAATGGGTAACCAATTTGAAGAGCCAGACCAACCCATGCAGAGCATTGATACAATCATGCAGATAATTTCCGAAGCTACCATACCGGCTGCTGGGTCTTATTCTTTAGACCAGTTTATGGATAACATCGATATGGATTATGACATTGATGATTTAGAATCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATACTAA 1131 0.4359 MDRAAMTVGPGMDLPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVMTFIYNALLNFIQVILTPTHLAIVMEYASGGELFDRICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRILSVQYAIPDFVQISPECRQLISRIFVFDPAERITMREIWNHEWFLKNLPAELMDEKIMGNQFEEPDQPMQSIDTIMQIISEATIPAAGSYSLDQFMDNIDMDYDIDDLESESELDIDSSGEIVYAIY. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02443 376 Pfam Protein kinase domain 23 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02443 376 Gene3D Transferase(Phosphotransferase) domain 1 113 301 - -
Seca11g02443 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Seca11g02443 376 CDD STKc_SnRK2 22 292 - -
Seca11g02443 376 ProSiteProfiles Protein kinase domain profile. 23 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02443 376 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Seca11g02443 376 FunFam Serine/threonine-protein kinase SRK2E 113 301 - -
Seca11g02443 376 SMART serkin_6 23 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02443 376 SUPERFAMILY Protein kinase-like (PK-like) 15 330 IPR011009 -
Seca11g02443 376 PANTHER SERINE/THREONINE KINASE 22 321 - -
Seca11g02443 376 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02443 Seca-Chr11 39071528 39075831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02443 22 303 CBL-interacting serine-threonine protein kinases AT4G24400 41.237 1.59e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca11g02443 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02443 K14498 - gmx:100806949 658.677