Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02441 ATGTCATCAACAAATTCTCCATGCGCGGCATGTAAGATTCTCCGTCGCAAGTGCACACAAGAGTGTATTTTTGCTTCGTACTTTCATCCAGAGAACCCACAACGGTTCATATGTGTGCACCGTGTGTTCGGTGCTAGCAACGTGGCAAAGCTTTTGAAGGAGTTGAGGGTGTCGCAGCAAGACGACGCCGTTAGGTCACTGGCCTATGAGGCCGAGGCGCGTCTGAGGGACCCCATCTACGGGTGCGTGGGGTTCATCTCGGTGCTTCAGAAGCGACTGAAGAAAATCCAAACCGAGCTTGAGAATGCTAAGAAGGAATTGACTACTTACCTTACTCCACAAGCTATGGAGTACTTTCTGGCCAATCCCAGTGCGTTACTCACGAAACAAAACAACTCACAAGGGAACCCGTTCGTGCTTTTTCCTAACTACATTCCGCCGATTTTGGCAGGCCATAGTGGTAGACAGATGGGGATTTTGGAAGCTCAACATCTTGTTGCTGTGGCCAGAGAGCAGAACCGGTTCATGGTCCAGCGACAACAGCAAAAGTTTCTGAGGTTGGAAACGGTTCATTCAGCTGTGGTTGCAGCTGGTGGTGGTAGTGGGTTTGGTCATCAGATGGGTGTTCCTCTTCCTTCTGCTCCTGTTCATGCTGCTGATCAAATGCAACCTTCTTTGGCTATGGGAACCTTTGAAAATGTTGGCAGTTACCAAAATCACCAGCAACCACCACCGCAACAAATGGAACAACAACAACGTCGTGTTCCTCATCCCCCTCCTATTGAGGCACAACTGCTACTTTCGCCACAACAATCACGACAACAACCCAATCAATCCGAAAGTGAGGATGGTAGGAGCATTGGTCCTTATTCTTATTGA 879 0.4892 MSSTNSPCAACKILRRKCTQECIFASYFHPENPQRFICVHRVFGASNVAKLLKELRVSQQDDAVRSLAYEAEARLRDPIYGCVGFISVLQKRLKKIQTELENAKKELTTYLTPQAMEYFLANPSALLTKQNNSQGNPFVLFPNYIPPILAGHSGRQMGILEAQHLVAVAREQNRFMVQRQQQKFLRLETVHSAVVAAGGGSGFGHQMGVPLPSAPVHAADQMQPSLAMGTFENVGSYQNHQQPPPQQMEQQQRRVPHPPPIEAQLLLSPQQSRQQPNQSESEDGRSIGPYSY. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02441 292 MobiDBLite consensus disorder prediction 235 253 - -
Seca11g02441 292 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca11g02441 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 267 - -
Seca11g02441 292 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca11g02441 292 Coils Coil 86 106 - -
Seca11g02441 292 MobiDBLite consensus disorder prediction 265 286 - -
Seca11g02441 292 MobiDBLite consensus disorder prediction 235 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02441 Seca-Chr11 38746544 38747422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02441 1 116 AS2 family AT5G66870 71.552 9.55e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g02441 LOB 9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02441 - - gmx:100796406 237.269