Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02436 ATGTCATCATCCAATTCTCCATGCGCGGCGTGTAAATTTCTCCGTCGCAAGTGCACGCTAGAGTGCGATTTCGCTCCGTACTTTCCGCCAGACAACCCGCAACGGTTCATATGCGTGCACCGTGTGTTCGGTGCTAGCAACGTGGCGAAGCTTTTAAAGGAGCTGCCAGTGTCGCAGCGAGAAGAAGCTGTTAAGTCTCTTGCCTATGAGGCTGAGGCACGTCTGAGGGATCCAGTCTATGGTTGCGTGGGATTCATATCTGTGCTTCAACAGCGTCTGAGACAAATCCAAACAGATCTTCATAACGCTAGAAAGGAGTTGGGTACTTATCAACTCAATGCGTTTCTCATGCAACCAAATAACCAACAGGGGAACCCGTTCATGCTTTTTCCTAACTACCCTAACAACATTCCGCAACCGCCGCCGGGTTTGGCGGGCCATGGAGGTGGACAGTTGGTGATTAGGGACCCGCAGCAGCAGGAGCTTTTGGAAGCTAATCAGTTGGCAGCAGCCGGAGAGCAACAACAGGTCATGCTCCAACAGCAGCAACAAGAGTTTATGAGGTTCAACGGTGGGTTGGAGCCGGTGGGTTCGGTGGCGGCTGGTGGTGGTGGGTTTGGTCATCATATGAGTGTTCCTCTTCATTCTGCTGCTCCTGTTCATCAAATGCCACCTTCTTTGGCTCTGGGAACCTTTGAAAATGTTGATAGTTACCAGATTCACCAGCAACCAGCGCAGCAGCAAATAGAACAACAACAACAACATGTTCCTCATCACCCTCCTATTGAGGCACAGCTGCTGCTTTCGCCACAGCAATCACAACAACAACCCAATCAGTCAGAATTAAGTGATGATGATGGTAGGAGTGATAGTCCTTCTTCTTGTTGA 888 0.5011 MSSSNSPCAACKFLRRKCTLECDFAPYFPPDNPQRFICVHRVFGASNVAKLLKELPVSQREEAVKSLAYEAEARLRDPVYGCVGFISVLQQRLRQIQTDLHNARKELGTYQLNAFLMQPNNQQGNPFMLFPNYPNNIPQPPPGLAGHGGGQLVIRDPQQQELLEANQLAAAGEQQQVMLQQQQQEFMRFNGGLEPVGSVAAGGGGFGHHMSVPLHSAAPVHQMPPSLALGTFENVDSYQIHQQPAQQQIEQQQQHVPHHPPIEAQLLLSPQQSQQQPNQSELSDDDGRSDSPSSC. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02436 295 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca11g02436 295 MobiDBLite consensus disorder prediction 248 295 - -
Seca11g02436 295 MobiDBLite consensus disorder prediction 266 282 - -
Seca11g02436 295 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca11g02436 295 Coils Coil 86 113 - -
Seca11g02436 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02436 Seca-Chr11 38490649 38493471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02436 1 203 AS2 family AT5G66870 48.927 1.78e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g02436 LOB 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02436 - - gmx:102664012 237.654