Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02434 ATGCGTTGGTTACCCTCCCTTCCTTTCTCCAATTCTAATTCTTCCCCCGCCGCCGTCGACCACCGCCGGAAGGCTCGGATCTTCGGGAGCTCCTTCCAGAAGCGCACCTTCCACGTTAGCGACCACGATGCCAGGTGGCACTTAGCCGACGAACCTCAGCCGTTGCCCTTGCCGGAGCTGTCCTCCGCCGCCGCGCTTCTTCGCCAGAGAGACTACTGTGACTTCCCTCTGCCCTCGCCCAAGGATGCGGCGGATGCTGCACCCTCCGCCGCCACCGGCTTTCGGATGCGGAGTGTTTTTGCTCGCCGAGAGACGAGAAAGAGTATGGAGCAGGGTGAAAGTAGGTCATCAAGGATGTTGCATCAAGATGTGAGTGGTTGTGAGAACACTAGAGATAATACTAACCACAACTGCGTTAGCATCCCTGGAAGGAATGCTTCAAACTCAAATAGTCCGTTTACAAGTCCCTCAATTAGCCCACAGAGAAGGATAAGTGTTGATTTTGTGCCTTATTATTATGTGACTCCAAGAGGAAATCAATTCTGGTCTGCACCAGAGTTGTCCACCTCTGAAGCAGGGATGCCACCTCCTGCATTCTTTGATTTATCAACATCAGGCACTGAAGCTTCTTCCTCTCCCCGTCAAAGTCCACAGGGAAGAAGTCCTCAGAGACACCTCAGAAGCTCAAGTGGACCTCCATCACCAATACACAACATGTTCTCCCTTGAGATCTCAGCGGCACGTCACGAAAGTAATGCTCCTGTCAGTGTTCACCCCTTACCCCTGCCTCCTGGAGCAGCCTTGCCCTCACCATCTGCTGCGGCTACCTTTTCCCATTCTGTGGCTAAGTCTGAATCATTGCCAATGAAAAACCAATGGCAGAAAGGGAAACTTATCGGGCGGGGCACATTTGGAAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTATGTGCAATGAAGGAAGTAGAAATATTTCCTGATGATCCAAAATCTGCAGAGTGTATGAAGCAGTTAGAGCAGGCTGATGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGTGCTATAACAGAATCTGTCATTCGGAATTTCACTCGCCACATCCTTTCAGGGTTGGCTTACTTACATGGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAATTTGCTTGTTGATTCTGCTGGAGTTGTTAAACTTGCTGATTTTGGGATGGCTAAGCATGTAAGTTCTAAGTCCCCTCTCTCTATATTTTACTATTTTTCTGGTCTCAGTCCTTGTAGAATAACTTGGGATCTCTATGTTCCACAGCTAACCGGATGTGAAGCTAATCTTTCTTTAAGGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAGGCTGTAATACAAAAGGATAACAGCTCAGACCTAGCTTATGCTATTGATATTTGGAGTTTGGGTTGTACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTATGTTTAAGGTTATGAGGGATACCCCACCTATACCTGAAACATTGTCATCTGAGGGTAAAGATTTCCTGAGGTGCTGCTTCAAAAGAAATCCAGCAGAGCGGCCAACTGCTGCAGTGTTACTAGAACATCGATTTTTGAAGAACTCACAACAACCAGATGTTTTATCTTCCACCCAGCTGTATAGTGGAACAAGCTTCATGGATAAATCCCATAGCCCCAGAGGGCAATCTGAAAATAAACCTTATCAGATGTCTATCCCCAGTGCAAAGATTGCAAAGGCGAAAGCAGCCGAAAGGCGCGGATTTTTCATTCCTTCCTTAGATATTCTCCCTGCATACTTAGACCACTGA 1899 0.4687 MRWLPSLPFSNSNSSPAAVDHRRKARIFGSSFQKRTFHVSDHDARWHLADEPQPLPLPELSSAAALLRQRDYCDFPLPSPKDAADAAPSAATGFRMRSVFARRETRKSMEQGESRSSRMLHQDVSGCENTRDNTNHNCVSIPGRNASNSNSPFTSPSISPQRRISVDFVPYYYVTPRGNQFWSAPELSTSEAGMPPPAFFDLSTSGTEASSSPRQSPQGRSPQRHLRSSSGPPSPIHNMFSLEISAARHESNAPVSVHPLPLPPGAALPSPSAAATFSHSVAKSESLPMKNQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAECMKQLEQADDRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHGKKTIHRDIKGANLLVDSAGVVKLADFGMAKHVSSKSPLSIFYYFSGLSPCRITWDLYVPQLTGCEANLSLRGSPYWMAPELMQAVIQKDNSSDLAYAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQQPDVLSSTQLYSGTSFMDKSHSPRGQSENKPYQMSIPSAKIAKAKAAERRGFFIPSLDILPAYLDH. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02434 632 MobiDBLite consensus disorder prediction 103 160 - -
Seca11g02434 632 Pfam Protein kinase domain 294 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02434 632 ProSitePatterns Protein kinases ATP-binding region signature. 299 322 IPR017441 GO:0005524
Seca11g02434 632 MobiDBLite consensus disorder prediction 203 236 - -
Seca11g02434 632 MobiDBLite consensus disorder prediction 118 160 - -
Seca11g02434 632 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 111 342 - -
Seca11g02434 632 Gene3D Transferase(Phosphotransferase) domain 1 289 597 - -
Seca11g02434 632 SUPERFAMILY Protein kinase-like (PK-like) 289 584 IPR011009 -
Seca11g02434 632 ProSiteProfiles Protein kinase domain profile. 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02434 632 MobiDBLite consensus disorder prediction 103 117 - -
Seca11g02434 632 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02434 632 MobiDBLite consensus disorder prediction 187 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02434 Seca-Chr11 38469968 38474793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02434 108 586 MAP Kinase Kinase Kinase AT5G66850 55.449 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Seca11g02434 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02434 - - gmx:100790701 820.076