Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02431 ATGGTGAACCCAAAGTGCTTCTTGGACGTCAGTATCGGCGGAGAGATAGAAGGTAGAGTCGTCATCGAGCTATTCAAAGACGTCGTTCCCAAAACCGCCGAAAATTTCAGAGCTCTCTGCACCGGCGAAAAAGGCATCGGTCCCAACACTGGCGTTCCCCTCCATTACAAGGGTGCTTGTTTTCATCGCGTGATCAAAGGGTTCATGATCCAAGGCGGTGACATCTCTGCCGGTGACGGCACCGGCGGAGAATCCATTTACGGTTCGAAGTTCGAGGACGAGAACTTTGAGCTGAAGCACGAGAGGAAAGGGATGTTATCCATGGCGAACGCGGGTCCTGACACCAACGGCTCTCAGTTTTTCATCACCACCACTCGGACCCCTCACTTGGACGGGAAGCACGTGGTGTTCGGGAGGGTCGTCAAAGGAATGGGCGTGGTTCGTTCTGTCGAGCATATTGCCACCGGCGAGAATGATCGTCCTGCTCAAGATGTTGTTGTTGTTGATTGTGGGGAAATTCCTCAAGGGGAGGATGATGGAGTTATTAACTTTTTTAAAGATGGTGATAGTTATCCCGATTGGCCAGCTGATCTTGATGTGAAATCGGATGACATTTCTTGGTGGATGAGTGCTGTGGACTCTATCAAAAGTCTTGGGAATGAACAGTATAAGAAGCAAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCCTTGCGCTATTTGGATGAATGTTGGGAGAAGGACGACATTGACCAAGAGAAGAGCAGTGCTTTAAGGAAGACTAAATCCCAAATCTTTACCAACAGTGCTGCTTGTAAATTGAAATTAGGTGATCTAAAAGGAGCTTTACTGGATTCAGACTTTGCATTGCACGATGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGTTGACATCTTCCAATGA 933 0.478 MVNPKCFLDVSIGGEIEGRVVIELFKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGACFHRVIKGFMIQGGDISAGDGTGGESIYGSKFEDENFELKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSVEHIATGENDRPAQDVVVVDCGEIPQGEDDGVINFFKDGDSYPDWPADLDVKSDDISWWMSAVDSIKSLGNEQYKKQDYKMALRKYRKALRYLDECWEKDDIDQEKSSALRKTKSQIFTNSAACKLKLGDLKGALLDSDFALHDGDNAKALFRKGQVDIFQ. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02431 310 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Seca11g02431 310 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Seca11g02431 310 Gene3D Tetratricopeptide repeat domain 208 309 IPR011990 GO:0005515
Seca11g02431 310 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Seca11g02431 310 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Seca11g02431 310 Gene3D - 1 179 IPR029000 -
Seca11g02431 310 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 CDD cyclophilin_ABH_like 4 171 - -
Seca11g02431 310 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Seca11g02431 310 SUPERFAMILY TPR-like 212 306 IPR011990 GO:0005515
Seca11g02431 310 FunFam peptidyl-prolyl cis-trans isomerase D 210 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02431 Seca-Chr11 38425438 38430275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02431 17 170 U-box Gene Family AT5G67530 44.516 6.77e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02431 K05864 - gmx:100803839 569.311