Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02426 ATGCACCAAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTATCTCCCCACGTTGGCAATCTCTCCTTTCTGAAAGATCTCAACCTTAGGAACAACAGTTTCTATGGAAAGATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGTATCTCTATCTCACCAACAACTCCTTCACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTCCTCTCCAAGAATTAATTTTAGCTGGAAATCATCTGATTGGTAAAATACCAATTGAGATTGGCTCTCTTCAGAAGCTTCAATTATTGGCGGTTGGGAGAAATAATTTAACTGGAGGATTCCCGCCATTTATAGGGAATCTTTCATCCCTAATTGGTCTTGGGGTGTCTTATAATAACTTAGAGGGAGATATTCCACAAGAAATATGCCGCCTAAAAAATCTGACAATTATACAGATGTTTATGAATAAATTGTATGGTACATTTCCTTCTTGTTTGTACAATGTGTCATCTCTTACTACAATCTCAGCCGGAGGTCCAATCCCCATTTCTGTGGGAAATGTTTCTACCCTCACACTGCTTGAGATCAGTCGAAACCAGTTTGTCGGACAAGTTCCAAGTCTAGGGAAGCTACAAAATCTTTGGAGGCTAAGTTTGTCTTTCAACAATTTAGGGGGAAATTCAACTAAGGATTTGGAGTTTTTTAAATCATTGACAAACTGCAGGACCATTCCAACTTCTTTTGGCAAGTTTCAAAATATGCAAGTATTAGATTTGAGCCAAAACAAACTTTCAGGACACATACCAGCCTTCATAGGAAATCTCAGTCAATTGTTTTATTTGGGTTTAGGAAAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGCAAACTGCCAAAAGTTGCAATCCCTAAACCTATCGCAAAACAACCTTAGAGGAACCATACCCTCTAAGGTTTTTAGCCTTTCCTCATTAACAAACTCATTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTGATGAAGTTGGCAGGCTAAAAAATATCGATTGGCTGGATCTCTCTGAGAATCATCTGTCTGGTGACATTTCTAGAGCCATTGGAGAATGCTTGAGCTTGGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGAATCATGCCATCCTCCTTGGCTTCACTCAAAGGCCTTCGACGTTTAGACCTATCACAAAACCACTTGTCTGGATCAATTCCTAAAGGTCTACAGAACATTTCTTTCCTAGAGTACTTGAATGTTTCTTATAACATGTTAGATGGTGAGGTACCAACAGAAGGTGTCTTCCAAAATGCAAGCAAGTTAGGAGTGGCTGGAAACAATAAGCTTTGTGGAGGTATTTCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGGTATGAAACATGCAAAACACCATAAGTTGATGGCAATGATAGTTATTGTGGTTGCTTTTCTTTTCATACTATCACTTGTTCTAACTATCTACTGGATAAGGAAAAGAAACAAGAAACCATCTTCTGATACACCAACAATTGGTCAGCTGGCCAAGGTTTCATACCAAGACCTATATCATGGAACCGATGGGTTCTCGGCTGAAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAATTCTTGTGTTAGAAGATAATGATGTTGCCATAAAGGTGTTGAACCTTCAGAGGAAAGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTTAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGTACAGATTTCAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAGCAATGGCTGCATCCAAGGACAGGAGGTGAAGAGCATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTACATTATCTCCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTACTTGATGATGACATGGTTGCTCATGTGAGTGACTTTGGCATAGCAAGACTTGTCTCAACCATTGGCGGTACCTCTCATAAACAAACTAGTACTGTTGGAATAAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAGTAGGATCTGAAGTGTCCACACACGGTGACATGTATAGCTTCGGGATTCTTGTGTTGGAAATGCTTACCGGAAGAAAACCTACCGATGAAATGTTTGAAGATGGTCAAAATCTACATAAGTTTGTTGAGATTTCATTTCCTGATAATCTTTTACAGATTTTGGACCCACCTCTTGTACCAACAGATGAAGAATCAACAAGAGAAGAAGAAATTAGTGGGGATCTCATTTTAACTGTAAAGAAGTGCTTTGTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAATATAGTGGATGTCATTAGAGAGTTAAACAAAATCAGAAAGGCCTTTCTTAATGATATGCTAGAGAATTGGCCACCAGAACTTAGAATTGATGAATGCTTGTCACCTGCATCCATTGGTTCTGTTGTAATTGCAGAAAAGGATTCAAGGAATGAGAAATATGCAAGTACATTACAAGTCCCATTAATTCAGTTGAATACTTGGAGGGCTGATCAAGTGATTTTGGTGACTGATTCAAGTGTGTTGTATCATATTTGA 2742 0.3877 MHQRVTELNLQGYQLHGSLSPHVGNLSFLKDLNLRNNSFYGKIPQELGRLLQLQYLYLTNNSFTGEIPTNLTSCSPLQELILAGNHLIGKIPIEIGSLQKLQLLAVGRNNLTGGFPPFIGNLSSLIGLGVSYNNLEGDIPQEICRLKNLTIIQMFMNKLYGTFPSCLYNVSSLTTISAGGPIPISVGNVSTLTLLEISRNQFVGQVPSLGKLQNLWRLSLSFNNLGGNSTKDLEFFKSLTNCRTIPTSFGKFQNMQVLDLSQNKLSGHIPAFIGNLSQLFYLGLGKNMLEGNIPPSIANCQKLQSLNLSQNNLRGTIPSKVFSLSSLTNSLDLSQNSLSGTLPDEVGRLKNIDWLDLSENHLSGDISRAIGECLSLEYLYLQGNSFHGIMPSSLASLKGLRRLDLSQNHLSGSIPKGLQNISFLEYLNVSYNMLDGEVPTEGVFQNASKLGVAGNNKLCGGISELHLPPCPVKGMKHAKHHKLMAMIVIVVAFLFILSLVLTIYWIRKRNKKPSSDTPTIGQLAKVSYQDLYHGTDGFSAENLIGSGSFGSVYKGILVLEDNDVAIKVLNLQRKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEYMKNGSLEQWLHPRTGGEEHPRTLDLDQRLNIIMDVASALHYLHLECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIGGTSHKQTSTVGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRKPTDEMFEDGQNLHKFVEISFPDNLLQILDPPLVPTDEESTREEEISGDLILTVKKCFVSLFRIGLACSVESPRERMNIVDVIRELNKIRKAFLNDMLENWPPELRIDECLSPASIGSVVIAEKDSRNEKYASTLQVPLIQLNTWRADQVILVTDSSVLYHI. 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02426 913 Gene3D Ribonuclease Inhibitor 243 328 IPR032675 -
Seca11g02426 913 SMART LRR_typ_2 397 420 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 300 324 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 375 396 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 50 74 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 122 146 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 252 276 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 349 373 IPR003591 -
Seca11g02426 913 SMART LRR_typ_2 421 446 IPR003591 -
Seca11g02426 913 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Seca11g02426 913 Gene3D Transferase(Phosphotransferase) domain 1 620 851 - -
Seca11g02426 913 SUPERFAMILY L domain-like 3 241 - -
Seca11g02426 913 FunFam LRR receptor-like serine/threonine-protein kinase EFR 243 476 - -
Seca11g02426 913 Gene3D Ribonuclease Inhibitor 329 467 IPR032675 -
Seca11g02426 913 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Seca11g02426 913 Pfam Leucine rich repeat 375 434 IPR001611 GO:0005515
Seca11g02426 913 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Seca11g02426 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Seca11g02426 913 SUPERFAMILY L domain-like 243 460 - -
Seca11g02426 913 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 242 - -
Seca11g02426 913 Pfam Protein kinase domain 540 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02426 913 SUPERFAMILY Protein kinase-like (PK-like) 511 837 IPR011009 -
Seca11g02426 913 Gene3D Phosphorylase Kinase; domain 1 520 619 - -
Seca11g02426 913 ProSiteProfiles Protein kinase domain profile. 538 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02426 913 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 620 850 - -
Seca11g02426 913 FunFam LRR receptor-like serine/threonine-protein kinase EFR 509 619 - -
Seca11g02426 913 PANTHER LEUCINE RICH REPEAT KINASE 2 245 841 - -
Seca11g02426 913 SMART serkin_6 538 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02426 Seca-Chr11 38375067 38379167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02426 2 845 Receptor kinase-like Gene Family AT3G47580 41.763 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g02426 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02426 - - gmx:100801459 985.326